hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-20333780/chunk_1/iprscan-20080812-20333780.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk01079 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00360 153.5 2.2e-41 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00360 1/2 58 134 .. 1 121 [] 77.2 2.1e-18 SM00360 2/2 147 222 .. 1 121 [] 76.3 3.7e-18 Alignments of top-scoring domains: SM00360: domain 1 of 2, from 58 to 134: score 77.2, E = 2.1e-18 *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri +lfVg + p +e+dL+ lF ++fG + + + hk01079 58 KLFVGQI--PRHLDEKDLKPLF--------------EQFGRIYELTV 88 vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli ++d+ TG +kG+aF ++ +++A kA + hk01079 89 LKDPY---------------------TGMHKGCAFLTYCARDSAIKA--Q 115 ealnaskGkeledgGrptlglrVe<-* al+++k + + rp ++V+ hk01079 116 TALHEQKTLPG--MARP---IQVK 134 SM00360: domain 2 of 2, from 147 to 222: score 76.3, E = 3.7e-18 *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri +lfVg L +++ +eed+ +lF ++fG + ++ + hk01079 147 KLFVGML--NKQQSEEDVLRLF--------------QPFGVIDECTV 177 vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli +r +d G skG+aFV+F+++ +A++A i hk01079 178 LRGPD----------------------GSSKGCAFVKFSSHTEAQAA--I 203 ealnaskGkeledgGrptlglrVe<-* al++s ++ l V+ hk01079 204 HALHGSQTMPG--ASSS---LVVK 222 //