hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-20391595/chunk_1/iprscan-20080812-20391595.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk01137 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 489.5 3.8e-144 1 PF07714.7.fs Protein tyrosine kinase 487.6 1.4e-143 1 PF01404.9.ls Ephrin receptor ligand binding domain 464.1 1.6e-136 1 PF01404.9.fs Ephrin receptor ligand binding domain 462.1 6.4e-136 1 PF00069.15.ls Protein kinase domain 151.7 1.8e-42 1 PF00069.15.fs Protein kinase domain 149.8 1.9e-42 1 PF00041.11.ls Fibronectin type III domain 141.8 1.8e-39 2 PF00041.11.fs Fibronectin type III domain 137.8 6.5e-39 2 PF00536.20.fs SAM domain (Sterile alpha motif) 118.0 4e-34 1 PF00536.20.ls SAM domain (Sterile alpha motif) 120.0 6.3e-33 1 PF07647.7.fs SAM domain (Sterile alpha motif) 100.3 9e-29 1 PF07647.7.ls SAM domain (Sterile alpha motif) 102.3 1.3e-27 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01404.9.fs 1/1 183 356 .. 1 177 [] 462.1 6.4e-136 PF01404.9.ls 1/1 183 356 .. 1 177 [] 464.1 1.6e-136 PF00041.11.ls 1/2 484 579 .. 1 84 [] 63.7 5.4e-16 PF00041.11.fs 1/2 484 579 .. 1 84 [] 61.7 4.3e-17 PF00041.11.ls 2/2 597 679 .. 1 84 [] 78.0 2.7e-20 PF00041.11.fs 2/2 597 679 .. 1 84 [] 76.0 3.4e-21 PF00069.15.ls 1/1 777 1036 .. 1 287 [] 151.7 1.8e-42 PF00069.15.fs 1/1 777 1036 .. 1 287 [] 149.8 1.9e-42 PF07714.7.fs 1/1 777 1036 .. 1 272 [] 487.6 1.4e-143 PF07714.7.ls 1/1 777 1036 .. 1 272 [] 489.5 3.8e-144 PF07647.7.fs 1/1 1066 1133 .. 1 72 [] 100.3 9e-29 PF07647.7.ls 1/1 1066 1133 .. 1 72 [] 102.3 1.3e-27 PF00536.20.fs 1/1 1067 1131 .. 1 65 [] 118.0 4e-34 PF00536.20.ls 1/1 1067 1131 .. 1 65 [] 120.0 6.3e-33 Alignments of top-scoring domains: PF01404.9.fs: domain 1 of 1, from 183 to 356: score 462.1, E = 6.4e-136 *->EvtLLDtktatgELGWltyPpdGWeEvsglDEnnrpIrTYQVCnVme E+tL+Dtk++t+EL W+++P++GWeEvsg+DE+++pIrTYQVCnV+e hk01137 183 EETLMDTKWVTSELAWTSHPESGWEEVSGYDEAMNPIRTYQVCNVRE 229 pnQnNWLRTnwIeRrgAqRvyveLkFTvRDCnSlPgvlGtCKETFNLYYy ++QnNWLRT++I+Rr++qRvyveLkFTvRDCnS+P+++G+CKETFNL+Yy hk01137 230 SSQNNWLRTGFIWRRDVQRVYVELKFTVRDCNSIPNIPGSCKETFNLFYY 279 ESDedvgta.lpawrenqyiKvDTIAADESFtqvDlgdrvlKLNtEvRsv E+D+dv++a++p+w+en+y+KvDTIA+DESF+++D+g ++Nt+vRs+ hk01137 280 EADSDVASAsSPFWMENPYVKVDTIAPDESFSRLDAG----RVNTKVRSF 325 GPLsKkGFYLAFQDvGACiALvSVRVFYKKC<-* GPLsK+GFYLAFQD+GAC++L+SVR FYKKC hk01137 326 GPLSKAGFYLAFQDQGACMSLISVRAFYKKC 356 PF01404.9.ls: domain 1 of 1, from 183 to 356: score 464.1, E = 1.6e-136 *->EvtLLDtktatgELGWltyPpdGWeEvsglDEnnrpIrTYQVCnVme E+tL+Dtk++t+EL W+++P++GWeEvsg+DE+++pIrTYQVCnV+e hk01137 183 EETLMDTKWVTSELAWTSHPESGWEEVSGYDEAMNPIRTYQVCNVRE 229 pnQnNWLRTnwIeRrgAqRvyveLkFTvRDCnSlPgvlGtCKETFNLYYy ++QnNWLRT++I+Rr++qRvyveLkFTvRDCnS+P+++G+CKETFNL+Yy hk01137 230 SSQNNWLRTGFIWRRDVQRVYVELKFTVRDCNSIPNIPGSCKETFNLFYY 279 ESDedvgta.lpawrenqyiKvDTIAADESFtqvDlgdrvlKLNtEvRsv E+D+dv++a++p+w+en+y+KvDTIA+DESF+++D+g ++Nt+vRs+ hk01137 280 EADSDVASAsSPFWMENPYVKVDTIAPDESFSRLDAG----RVNTKVRSF 325 GPLsKkGFYLAFQDvGACiALvSVRVFYKKC<-* GPLsK+GFYLAFQD+GAC++L+SVR FYKKC hk01137 326 GPLSKAGFYLAFQDQGACMSLISVRAFYKKC 356 PF00041.11.ls: domain 1 of 2, from 484 to 579: score 63.7, E = 5.4e-16 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge Ps+P+++ +++v++tsl l+Ws P++ g+++ Y+v + +++ g + hk01137 484 PSPPRGV-ISNVNETSLILEWSEPRdlGGRDDLLYNVIC-KKCHGAG 528 .........wkeltvpgt....ttsytltgLkPgteYtvrVqAvnggGGp + + ++ +++ vp++ + ++++++++ L ++t+Yt+ VqAvng+ ++ hk01137 529 gasacsrcdDNVEFVPRQlgltERRVHISHLLAHTRYTFEVQAVNGV-SG 577 eS<-* S hk01137 578 KS 579 PF00041.11.fs: domain 1 of 2, from 484 to 579: score 61.7, E = 4.3e-17 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge Ps+P+++ +++v++tsl l+Ws P++ g+++ Y+v + +++ g + hk01137 484 PSPPRGV-ISNVNETSLILEWSEPRdlGGRDDLLYNVIC-KKCHGAG 528 .........wkeltvpgt....ttsytltgLkPgteYtvrVqAvnggGGp + + ++ +++ vp++ + ++++++++ L ++t+Yt+ VqAvng+ ++ hk01137 529 gasacsrcdDNVEFVPRQlgltERRVHISHLLAHTRYTFEVQAVNGV-SG 577 eS<-* S hk01137 578 KS 579 PF00041.11.ls: domain 2 of 2, from 597 to 679: score 78.0, E = 2.7e-20 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew Ps++ l+ + + +sltlsW pP+++ng+i Ye +y +k++g hk01137 597 PSEVPTLRLHSSSGSSLTLSWAPPErPNGVILDYEMKY-FEKSEG-- 640 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* tv+++ +s++l gL+P+ +Y+v+V+A++ +G G++S hk01137 641 IASTVTSQMNSVQLDGLRPDARYVVQVRARTVAGyGQYS 679 PF00041.11.fs: domain 2 of 2, from 597 to 679: score 76.0, E = 3.4e-21 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew Ps++ l+ + + +sltlsW pP+++ng+i Ye +y +k++g hk01137 597 PSEVPTLRLHSSSGSSLTLSWAPPErPNGVILDYEMKY-FEKSEG-- 640 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* tv+++ +s++l gL+P+ +Y+v+V+A++ +G G++S hk01137 641 IASTVTSQMNSVQLDGLRPDARYVVQVRARTVAGyGQYS 679 PF00069.15.ls: domain 1 of 1, from 777 to 1036: score 151.7, E = 1.8e-42 *->yelleklGsGsfGtVykakhkgtgk...iVAvKiikkrkekskkdkt +++e++G+G fG+V++++ k g+++ VA+K++k+ ++ +++ hk01137 777 VKIEEVIGAGEFGEVCRGRLKQPGRrevFVAIKTLKVGYTER--QRR 821 arrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdy ++++ E++i+ ++HpNI+rl +v++ ++ + + +E++e+ L ++ hk01137 822 DFLS-EASIMGQFDHPNIIRLEGVVTKSRPVMILTEFMENC----ALDSF 866 lsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldn l+ ++g + + ++ +++ i+ g++YL +++ +HRDL NIL+++ hk01137 867 LR--LNDGQF--TVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNS 912 ngvvdaflKiaDFGlAkkls....t.sss.lttfvGTpwYmAPEvllggn n v+ K++DFGl+++l+++++ + +++ + +++ APE + ++ hk01137 913 NLVC----KVSDFGLSRFLEddpsDpTYTsSLGGKIPIRWTAPEAIA-YR 957 gygtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkilgpple + ++++DvWS+G++++e+++ G+ P+++ s+ d + ++++ + p++ hk01137 958 KFTSASDVWSYGIVMWEVMSyGERPYWDM---SnQDVINAVEQDYRLPPP 1004 fdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPw d+p ++ +L+ +c+ +D + R+ + +i++ hk01137 1005 MDCP-----------------TALHQLMLDCWVRDRNLRPKFSQIVNT-- 1035 f<-* + hk01137 1036 L 1036 PF00069.15.fs: domain 1 of 1, from 777 to 1036: score 149.8, E = 1.9e-42 *->yelleklGsGsfGtVykakhkgtgk...iVAvKiikkrkekskkdkt +++e++G+G fG+V++++ k g+++ VA+K++k+ ++ +++ hk01137 777 VKIEEVIGAGEFGEVCRGRLKQPGRrevFVAIKTLKVGYTER--QRR 821 arrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdy ++++ E++i+ ++HpNI+rl +v++ ++ + + +E++e+ L ++ hk01137 822 DFLS-EASIMGQFDHPNIIRLEGVVTKSRPVMILTEFMENC----ALDSF 866 lsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldn l+ ++g + + ++ +++ i+ g++YL +++ +HRDL NIL+++ hk01137 867 LR--LNDGQF--TVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNS 912 ngvvdaflKiaDFGlAkkls....t.sss.lttfvGTpwYmAPEvllggn n v+ K++DFGl+++l+++++ + +++ + +++ APE + ++ hk01137 913 NLVC----KVSDFGLSRFLEddpsDpTYTsSLGGKIPIRWTAPEAIA-YR 957 gygtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkilgpple + ++++DvWS+G++++e+++ G+ P+++ s+ d + ++++ + p++ hk01137 958 KFTSASDVWSYGIVMWEVMSyGERPYWDM---SnQDVINAVEQDYRLPPP 1004 fdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPw d+p ++ +L+ +c+ +D + R+ + +i++ hk01137 1005 MDCP-----------------TALHQLMLDCWVRDRNLRPKFSQIVNT-- 1035 f<-* + hk01137 1036 L 1036 PF07714.7.fs: domain 1 of 1, from 777 to 1036: score 487.6, E = 1.4e-143 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie +k+ +++G+G+FGeV++G+lk +++ e+ VA+KtLk g++e++ hk01137 777 VKIEEVIGAGEFGEVCRGRLK-QPGRREVFVAIKTLKV-GYTERQ-- 819 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL r+dFl+EAsiM ++ dHpNi+rL Gv+tk ++P ++i tE+me+ L hk01137 820 RRDFLSEASIMGQF-DHPNIIRLEGVVTK-SRP----VMILTEFMENCAL 863 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs ++fLr + ++++t+ +L+++ + iA+GM YL+++n+vHRDLAARN+LV+ hk01137 864 DSFLRLN--DGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVN 911 enlvVKIsDFGLaRdi...ynddyYvrkkgggklPvkWmAPEslkygkFt +nlv+K+sDFGL+R ++++ +d +Y +++ ggk+P++W+APE+++y+kFt hk01137 912 SNLVCKVSDFGLSRFLeddPSDPTY-TSSLGGKIPIRWTAPEAIAYRKFT 960 skSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCP s+SDVWS+G+++WE++++Ge P Y++msn++v++ + e++yRLp+P++CP hk01137 961 SASDVWSYGIVMWEVMSYGERP-YWDMSNQDVINAV-EQDYRLPPPMDCP 1008 delYdlMlqCWaedPedRPtFselveeL<-* l++lMl+CW +d + RP Fs++v+ L hk01137 1009 TALHQLMLDCWVRDRNLRPKFSQIVNTL 1036 PF07714.7.ls: domain 1 of 1, from 777 to 1036: score 489.5, E = 3.8e-144 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie +k+ +++G+G+FGeV++G+lk +++ e+ VA+KtLk g++e++ hk01137 777 VKIEEVIGAGEFGEVCRGRLK-QPGRREVFVAIKTLKV-GYTERQ-- 819 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL r+dFl+EAsiM ++ dHpNi+rL Gv+tk ++P ++i tE+me+ L hk01137 820 RRDFLSEASIMGQF-DHPNIIRLEGVVTK-SRP----VMILTEFMENCAL 863 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs ++fLr + ++++t+ +L+++ + iA+GM YL+++n+vHRDLAARN+LV+ hk01137 864 DSFLRLN--DGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVN 911 enlvVKIsDFGLaRdi...ynddyYvrkkgggklPvkWmAPEslkygkFt +nlv+K+sDFGL+R ++++ +d +Y +++ ggk+P++W+APE+++y+kFt hk01137 912 SNLVCKVSDFGLSRFLeddPSDPTY-TSSLGGKIPIRWTAPEAIAYRKFT 960 skSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCP s+SDVWS+G+++WE++++Ge P Y++msn++v++ + e++yRLp+P++CP hk01137 961 SASDVWSYGIVMWEVMSYGERP-YWDMSNQDVINAV-EQDYRLPPPMDCP 1008 delYdlMlqCWaedPedRPtFselveeL<-* l++lMl+CW +d + RP Fs++v+ L hk01137 1009 TALHQLMLDCWVRDRNLRPKFSQIVNTL 1036 PF07647.7.fs: domain 1 of 1, from 1066 to 1133: score 100.3, E = 9e-29 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa ++++++ +v++WL++i++ g+Yk++F ++g+ +++l+ +++t+edL hk01137 1066 PDYTTFTTVGDWLDAIKM-GRYKESFVSAGFASFDLV-AQMTAEDL- 1109 klalGitsvghRkkilkkiqelkqq<-* + ++G+t++gh+kkil++iq+++ q hk01137 1110 L-RIGVTLAGHQKKILSSIQDMRLQ 1133 PF07647.7.ls: domain 1 of 1, from 1066 to 1133: score 102.3, E = 1.3e-27 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa ++++++ +v++WL++i++ g+Yk++F ++g+ +++l+ +++t+edL hk01137 1066 PDYTTFTTVGDWLDAIKM-GRYKESFVSAGFASFDLV-AQMTAEDL- 1109 klalGitsvghRkkilkkiqelkqq<-* + ++G+t++gh+kkil++iq+++ q hk01137 1110 L-RIGVTLAGHQKKILSSIQDMRLQ 1133 PF00536.20.fs: domain 1 of 1, from 1067 to 1131: score 118.0, E = 4e-34 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG d+++f +Vg+WL++i++g+Y+++F+sag+ ++d ++q+t+eDL+++G hk01137 1067 DYTTFTTVGDWLDAIKMGRYKESFVSAGFASFDLVAQMTAEDLLRIG 1113 vtllGHrkKIlssIqgLk<-* vtl+GH+kKIlssIq+++ hk01137 1114 VTLAGHQKKILSSIQDMR 1131 PF00536.20.ls: domain 1 of 1, from 1067 to 1131: score 120.0, E = 6.3e-33 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG d+++f +Vg+WL++i++g+Y+++F+sag+ ++d ++q+t+eDL+++G hk01137 1067 DYTTFTTVGDWLDAIKMGRYKESFVSAGFASFDLVAQMTAEDLLRIG 1113 vtllGHrkKIlssIqgLk<-* vtl+GH+kKIlssIq+++ hk01137 1114 VTLAGHQKKILSSIQDMR 1131 //