hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-20391595/chunk_1/iprscan-20080812-20391595.nocrc
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Query sequence: hk01137
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 463.2   1.2e-134   1
SM00615                                                 433.9   8.7e-126   1
SM00220                                                 159.4    3.6e-43   1
SM00060                                                  99.4    4.1e-25   2
SM00454                                                  97.1    2.1e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00615    1/1     183   356 ..     1   184 []   433.9 8.7e-126
SM00060    1/2     484   579 ..     1    69 []    43.9  2.1e-08
SM00060    2/2     597   676 ..     1    69 []    55.5    7e-12
SM00220    1/1     777  1040 ..     1   231 []   159.4  3.6e-43
SM00219    1/1     777  1036 ..     1   280 []   463.2 1.2e-134
SM00454    1/1    1066  1133 ..     1    67 []    97.1  2.1e-24

Alignments of top-scoring domains:
SM00615: domain 1 of 1, from 183 to 356: score 433.9, E = 8.7e-126
                   *->EVvLLDtktetgeLgWttyPpsggtWeEvsglDeknnpiRtYqvCnV
                      E++L+Dtk++t+eL Wt++P+sg  WeEvsg+De +npiRtYqvCnV
     hk01137   183    EETLMDTKWVTSELAWTSHPESG--WEEVSGYDEAMNPIRTYQVCNV 227  

                   meinesnQNNWLrTnfIeRrgAsRiYVELkFTvRDCnSlpgvaglsCKET
                   +e   s+QNNWLrT+fI+Rr+++R+YVELkFTvRDCnS+p+ +g sCKET
     hk01137   228 RE---SSQNNWLRTGFIWRRDVQRVYVELKFTVRDCNSIPNIPG-SCKET 273  

                   FNLYYyEsDsdtatastpfwmenpyiKvDTiAADesftqvdlGdrvvklN
                   FNL+YyE+Dsd+a+as+pfwmenpy+KvDTiA+Desf++ d G    ++N
     hk01137   274 FNLFYYEADSDVASASSPFWMENPYVKVDTIAPDESFSRLDAG----RVN 319  

                   tevrsvGplskkGfYLAFQdqGACvaLlsVrVFYkkC<-*
                   t+vrs+Gplsk+GfYLAFQdqGAC++L+sVr FYkkC   
     hk01137   320 TKVRSFGPLSKAGFYLAFQDQGACMSLISVRAFYKKC    356  

SM00060: domain 1 of 2, from 484 to 579: score 43.9, E = 2.1e-08
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP..............
                      P+pP++    ++++v++t      s+ l+W++P + ++ ++  ++  
     hk01137   484    PSPPRG----VISNVNET------SLILEWSEPrdlggrddllynvi 520  

                   ..................ivgYr..........ytltgLkPgaepwteYe
                    ++ ++ ++ +  +  ++ v++++++ + +++++ +++L ++    t+Y+
     hk01137   521 ckkchgaggasacsrcddNVEFVprqlglterrVHISHLLAH----TRYT 566  

                   frVrAvngndaGeg<-*
                   f V+Avng   G +   
     hk01137   567 FEVQAVNG-VSGKS    579  

SM00060: domain 2 of 2, from 597 to 676: score 55.5, E = 7e-12
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr...
                      P+ ++    lr+++ + +      s+tlsW pP+ +++ i+ Y+ + 
     hk01137   597    PSEVPT---LRLHSSSGS------SLTLSWAPPerpngvILDYEmky 634  

                   .................ytltgLkPgaepwteYefrVrAvngndaGeg<-
                    +++++  ++++++ +++ l+gL+P+     +Y+++VrA++   aG+g  
     hk01137   635 feksegiastvtsqmnsVQLDGLRPD----ARYVVQVRARTV--AGYG   676  

                   *
                    
     hk01137     -   -    

SM00220: domain 1 of 1, from 777 to 1040: score 159.4, E = 3.6e-43
                   *->YellkklGkGaFGkVylardkk...tgrlvAiKvik........eri
                       ++ +++G G FG+V+++r k +++    vAiK +k + ++++++++
     hk01137   777    VKIEEVIGAGEFGEVCRGRLKQpgrREVFVAIKTLKvgyterqrRDF 823  

                   lrEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrg
                   l+E +i+ + dHPNI++L +v   +  + + +E++e+    L ++l+ + 
     hk01137   824 LSEASIMGQfDHPNIIRLEGVVTKsRPVMILTEFMEN--CALDSFLRLND 871  

                   rrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hv
                   ++     ++  +   ++r i+ +++YL +++ +HRDL   NiL++s+ + 
     hk01137   872 GQ-----FTViQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSnlVC 916  

                   KlaDFGlArql............ttfvGTpeYmAPEvl...gYgkpavDi
                   K++DFGl+r+l++++++++ +++        + APE +  ++++  a+D+
     hk01137   917 KVSDFGLSRFLeddpsdptytssLGGKIPIRWTAPEAIayrKFTS-ASDV 965  

                   WSlGcilyEllt.GkpPFp..qldlifkkig...........SpeakdLi
                   WS G++++E ++ G+ P+++   + +++ +  +++ +++ + +  + +L+
     hk01137   966 WSYGIVMWEVMSyGERPYWdmSNQDVINAVEqdyrlpppmdcPTALHQLM 1015 

                   kklLvkdPekRlta.eaLedeldikaHPff<-*
                     ++v+d + R+  +++ +      ++  +   
     hk01137  1016 LDCWVRDRNLRPKFsQIVN-----TLDKLI    1040 

SM00219: domain 1 of 1, from 777 to 1036: score 463.2, E = 1.2e-134
                   *->ltlgkkLGeGaFGeVykGtlk......ieVAVKtLkeda....keeF
                      ++ ++++G G+FGeV++G+lk+++++++ VA+KtLk + +++++++F
     hk01137   777    VKIEEVIGAGEFGEVCRGRLKqpgrreVFVAIKTLKVGYterqRRDF 823  

                   lrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLl
                   l+Ea+iM ++  +HpNi++L Gv+t++        P+mi++E+me+ +L+
     hk01137   824 LSEASIMGQF--DHPNIIRLEGVVTKS-------RPVMILTEFMENCALD 864  

                   dyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk
                   ++Lr n +++++ +L+ +   IA+GM YL+++n+vHRDLAARN+Lv++n+
     hk01137   865 SFLRLNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNL 914  

                   vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkd
                   v+K+sDFGLsR+l+dd     s+ +Y+++   ggk  +PirW+APE++ +
     hk01137   915 VCKVSDFGLSRFLEDD----PSDPTYTSSL--GGK--IPIRWTAPEAIAY 956  

                   gkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRl
                   +kFts+SDVWS+G+++WE++++Ge PY++     msn++v++ +++ yRl
     hk01137   957 RKFTSASDVWSYGIVMWEVMSYGERPYWD-----MSNQDVINAVEQDYRL 1001 

                   pkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                   p+P +        CP++l++lMl+CW +d + RP Fs++v  l   
     hk01137  1002 PPPMD--------CPTALHQLMLDCWVRDRNLRPKFSQIVNTL    1036 

SM00454: domain 1 of 1, from 1066 to 1133: score 97.1, E = 2.1e-24
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                      ++  ++ +V++WL++i++++Y++ F ++g+ +++l+++++ edL+++
     hk01137  1066    PDyTTFTTVGDWLDAIKMGRYKESFVSAGFASFDLVAQMTAEDLLRI 1112 

                   GitllGhRkkIlsaiqklkeq<-*
                   G+tl+Gh+kkIls+iq+++ q   
     hk01137  1113 GVTLAGHQKKILSSIQDMRLQ    1133 

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