hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-20443160/chunk_1/iprscan-20080812-20443160.nocrc
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Query sequence: hk01154
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00134.13.fs Cyclin, N-terminal domain                      109.5    6.1e-31   1
PF00134.13.ls Cyclin, N-terminal domain                      111.3    2.5e-30   1
PF02984.9.fs Cyclin, C-terminal domain                      100.4    4.1e-28   1
PF02984.9.ls Cyclin, C-terminal domain                      102.2    1.4e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00134.13.fs   1/1     196   321 ..     1   146 []   109.5  6.1e-31
PF00134.13.ls   1/1     196   321 ..     1   146 []   111.3  2.5e-30
PF02984.9.fs   1/1     323   450 ..     1   136 []   100.4  4.1e-28
PF02984.9.ls   1/1     323   450 ..     1   136 []   102.2  1.4e-27

Alignments of top-scoring domains:
PF00134.13.fs: domain 1 of 1, from 196 to 321: score 109.5, E = 6.1e-31
                   *->diyaylrelEeeylplpppdyldqqpqpdsidinpkMRaiLvDWLve
                      +i   l+++        +   ++ q       +n +MR iL+DWLve
     hk01154   196    EIVCQLFQASQA---VSKQQVFSVQK-----GLNDTMRYILIDWLVE 234  

                   VhekfkLlpeTLyLavnylDRFLskkpvpklkvprkklQLvGvtaLliAs
                   V++  ++++ +L+L+v ++DR+L ++ +    vpr++lQL+G++++ i+ 
     hk01154   235 VATMKDFTSLCLHLTVECVDRYLRRR-L----VPRYRLQLLGIACMVICT 279  

                   KyEEiksdvypPevedfvyitasDnqaytkkeilrMEkliLktLkfdls<
                    +          ++ + v +t  Dn +y+ ++++rM+ +i ++L+ +++ 
     hk01154   280 RFISK----EILTIREAVWLT--DN-TYKYEDLVRMMGEIVSALEGKIR  321  

                   -*
                     
     hk01154     -    -    

PF00134.13.ls: domain 1 of 1, from 196 to 321: score 111.3, E = 2.5e-30
                   *->diyaylrelEeeylplpppdyldqqpqpdsidinpkMRaiLvDWLve
                      +i   l+++        +   ++ q       +n +MR iL+DWLve
     hk01154   196    EIVCQLFQASQA---VSKQQVFSVQK-----GLNDTMRYILIDWLVE 234  

                   VhekfkLlpeTLyLavnylDRFLskkpvpklkvprkklQLvGvtaLliAs
                   V++  ++++ +L+L+v ++DR+L ++ +    vpr++lQL+G++++ i+ 
     hk01154   235 VATMKDFTSLCLHLTVECVDRYLRRR-L----VPRYRLQLLGIACMVICT 279  

                   KyEEiksdvypPevedfvyitasDnqaytkkeilrMEkliLktLkfdls<
                    +          ++ + v +t  Dn +y+ ++++rM+ +i ++L+ +++ 
     hk01154   280 RFISK----EILTIREAVWLT--DN-TYKYEDLVRMMGEIVSALEGKIR  321  

                   -*
                     
     hk01154     -    -    

PF02984.9.fs: domain 1 of 1, from 323 to 450: score 100.4, E = 4.1e-28
                   *->PTPysFLrrflkaaqlkdksPvdqeeltlakyLlELslldydfflky
                      PT+ ++ +  l   +      v+ ++++l+++L+ELsll+ ++   y
     hk01154   323    PTVVDYKEVLLTLVP------VELRTQHLCSFLCELSLLHTSL-SAY 362  

                   pPSmiAAaAvylArctLnksssGnnppWtetLehytglqYseedlkeCvk
                    P  +AAaA++lAr t++++     +pWt +L   tg  +s+edl++Cv 
     hk01154   363 APARLAAAALLLARLTHGQT-----QPWTTQLWDLTG--FSYEDLIPCVL 405  

                   llvelhlna......pesklkavreKYssskfgkvssltppsssl<-*
                    l++ +   + +++ ++ +l+av++ + ++++g++s+++ +s s+   
     hk01154   406 SLHKKCFHDdapkdyRQVSLTAVKQRFEDKRYGEISQEEVLSYSQ    450  

PF02984.9.ls: domain 1 of 1, from 323 to 450: score 102.2, E = 1.4e-27
                   *->PTPysFLrrflkaaqlkdksPvdqeeltlakyLlELslldydfflky
                      PT+ ++ +  l   +      v+ ++++l+++L+ELsll+ ++   y
     hk01154   323    PTVVDYKEVLLTLVP------VELRTQHLCSFLCELSLLHTSL-SAY 362  

                   pPSmiAAaAvylArctLnksssGnnppWtetLehytglqYseedlkeCvk
                    P  +AAaA++lAr t++++     +pWt +L   tg  +s+edl++Cv 
     hk01154   363 APARLAAAALLLARLTHGQT-----QPWTTQLWDLTG--FSYEDLIPCVL 405  

                   llvelhlna......pesklkavreKYssskfgkvssltppsssl<-*
                    l++ +   + +++ ++ +l+av++ + ++++g++s+++ +s s+   
     hk01154   406 SLHKKCFHDdapkdyRQVSLTAVKQRFEDKRYGEISQEEVLSYSQ    450  

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