hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-16123976/chunk_1/iprscan-20090618-16123976.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk01536 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 287.9 1.8e-83 9 PF00096.16.fs Zinc finger, C2H2 type 270.2 3.8e-78 9 PF01096.9.fs Transcription factor S-II (TFIIS) 34.6 5.3e-10 7 PF01286.9.fs XPA protein N-terminal 33.0 1.2e-08 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 1/9 25 47 .. 1 24 [] 26.4 2.5e-05 PF00096.16.ls 1/9 25 47 .. 1 24 [] 28.3 2.4e-05 PF00096.16.ls 2/9 53 75 .. 1 24 [] 21.7 0.0025 PF00096.16.ls 3/9 81 103 .. 1 24 [] 32.7 1.2e-06 PF00096.16.fs 3/9 81 103 .. 1 24 [] 30.8 2e-06 PF00096.16.ls 4/9 109 131 .. 1 24 [] 35.6 1.6e-07 PF00096.16.fs 4/9 109 131 .. 1 24 [] 33.6 4e-07 PF00096.16.ls 5/9 137 159 .. 1 24 [] 35.7 1.5e-07 PF00096.16.fs 5/9 137 159 .. 1 24 [] 33.8 3.7e-07 PF00096.16.fs 6/9 165 187 .. 1 24 [] 30.9 1.9e-06 PF00096.16.ls 6/9 165 187 .. 1 24 [] 32.9 1e-06 PF00096.16.fs 7/9 193 215 .. 1 24 [] 32.1 9.6e-07 PF00096.16.ls 7/9 193 215 .. 1 24 [] 34.1 4.6e-07 PF00096.16.fs 8/9 221 243 .. 1 24 [] 30.8 1.9e-06 PF00096.16.ls 8/9 221 243 .. 1 24 [] 32.8 1.1e-06 PF00096.16.fs 9/9 249 271 .. 1 24 [] 32.2 9.1e-07 PF00096.16.ls 9/9 249 271 .. 1 24 [] 34.1 4.4e-07 Alignments of top-scoring domains: PF00096.16.fs: domain 1 of 9, from 25 to 47: score 26.4, E = 2.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp C + Fs +++L +H+++H hk01536 25 YKCP-MCREFFSERADLFMHQKIH 47 PF00096.16.ls: domain 1 of 9, from 25 to 47: score 28.3, E = 2.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp C + Fs +++L +H+++H hk01536 25 YKCP-MCREFFSERADLFMHQKIH 47 PF00096.16.ls: domain 2 of 9, from 53 to 75: score 21.7, E = 0.0025 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C+k F + s+L+ H+r H hk01536 53 HKCD-KCDKGFFHISELHIHWRDH 75 PF00096.16.ls: domain 3 of 9, from 81 to 103: score 32.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgk Fs+ L+rH+++H hk01536 81 YKCD-DCGKDFSTTTKLNRHKKIH 103 PF00096.16.fs: domain 3 of 9, from 81 to 103: score 30.8, E = 2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgk Fs+ L+rH+++H hk01536 81 YKCD-DCGKDFSTTTKLNRHKKIH 103 PF00096.16.ls: domain 4 of 9, from 109 to 131: score 35.6, E = 1.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk+F+ +s+L+ H+r+H hk01536 109 YKCY-ECGKAFNWSSHLQIHMRVH 131 PF00096.16.fs: domain 4 of 9, from 109 to 131: score 33.6, E = 4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk+F+ +s+L+ H+r+H hk01536 109 YKCY-ECGKAFNWSSHLQIHMRVH 131 PF00096.16.ls: domain 5 of 9, from 137 to 159: score 35.7, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+ Fs++snL +H+r+H hk01536 137 YVCS-ECGRGFSNSSNLCMHQRVH 159 PF00096.16.fs: domain 5 of 9, from 137 to 159: score 33.8, E = 3.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+ Fs++snL +H+r+H hk01536 137 YVCS-ECGRGFSNSSNLCMHQRVH 159 PF00096.16.fs: domain 6 of 9, from 165 to 187: score 30.9, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F++ s+L +H+r+H hk01536 165 FKCE-ECGKAFRHTSSLCMHQRVH 187 PF00096.16.ls: domain 6 of 9, from 165 to 187: score 32.9, E = 1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F++ s+L +H+r+H hk01536 165 FKCE-ECGKAFRHTSSLCMHQRVH 187 PF00096.16.fs: domain 7 of 9, from 193 to 215: score 32.1, E = 9.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk+Fs++s+L H+r+H hk01536 193 YKCY-ECGKAFSQSSSLCIHQRVH 215 PF00096.16.ls: domain 7 of 9, from 193 to 215: score 34.1, E = 4.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk+Fs++s+L H+r+H hk01536 193 YKCY-ECGKAFSQSSSLCIHQRVH 215 PF00096.16.fs: domain 8 of 9, from 221 to 243: score 30.8, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+Fs++s+L H+r+H hk01536 221 YRCC-GCGKAFSQSSSLCIHQRVH 243 PF00096.16.ls: domain 8 of 9, from 221 to 243: score 32.8, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+Fs++s+L H+r+H hk01536 221 YRCC-GCGKAFSQSSSLCIHQRVH 243 PF00096.16.fs: domain 9 of 9, from 249 to 271: score 32.2, E = 9.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+Fs++ +L H+r+H hk01536 249 FKCD-ECGKAFSQSTSLCIHQRVH 271 PF00096.16.ls: domain 9 of 9, from 249 to 271: score 34.1, E = 4.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+Fs++ +L H+r+H hk01536 249 FKCD-ECGKAFSQSTSLCIHQRVH 271 //