hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-16123976/chunk_1/iprscan-20090618-16123976.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hk01536
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 235.3    5.2e-66   9

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/9      25    47 ..     1    23 []    26.8   0.0029
SM00355      2/9      53    75 ..     1    23 []    18.6     0.88
SM00355      3/9      81   103 ..     1    23 []    28.9  0.00068
SM00355      4/9     109   131 ..     1    23 []    29.8  0.00038
SM00355      5/9     137   159 ..     1    23 []    29.3  0.00052
SM00355      6/9     165   187 ..     1    23 []    25.9   0.0054
SM00355      7/9     193   215 ..     1    23 []    25.1   0.0094
SM00355      8/9     221   243 ..     1    23 []    22.2    0.072
SM00355      9/9     249   271 ..     1    23 []    28.5  0.00092

Alignments of top-scoring domains:
SM00355: domain 1 of 9, from 25 to 47: score 26.8, E = 0.0029
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykCp+ C + fs + +L  H+++H   
     hk01536    25    YKCPM-CREFFSERaDLFMHQKIH    47   

SM00355: domain 2 of 9, from 53 to 75: score 18.6, E = 0.88
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C+k f + ++L  H r H   
     hk01536    53    HKCDK-CDKGFFHIsELHIHWRDH    75   

SM00355: domain 3 of 9, from 81 to 103: score 28.9, E = 0.00068
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC+  Cgk fs+ + L+rH ++H   
     hk01536    81    YKCDD-CGKDFSTTtKLNRHKKIH    103  

SM00355: domain 4 of 9, from 109 to 131: score 29.8, E = 0.00038
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC + Cgk f++ ++L+ HmrvH   
     hk01536   109    YKCYE-CGKAFNWSsHLQIHMRVH    131  

SM00355: domain 5 of 9, from 137 to 159: score 29.3, E = 0.00052
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+ fs+ ++L  H+rvH   
     hk01536   137    YVCSE-CGRGFSNSsNLCMHQRVH    159  

SM00355: domain 6 of 9, from 165 to 187: score 25.9, E = 0.0054
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk f++ ++L  H+rvH   
     hk01536   165    FKCEE-CGKAFRHTsSLCMHQRVH    187  

SM00355: domain 7 of 9, from 193 to 215: score 25.1, E = 0.0094
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC + Cgk fs+ ++L  H+rvH   
     hk01536   193    YKCYE-CGKAFSQSsSLCIHQRVH    215  

SM00355: domain 8 of 9, from 221 to 243: score 22.2, E = 0.072
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C   Cgk fs+ ++L  H+rvH   
     hk01536   221    YRCCG-CGKAFSQSsSLCIHQRVH    243  

SM00355: domain 9 of 9, from 249 to 271: score 28.5, E = 0.00092
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk fs+ ++L  H+rvH   
     hk01536   249    FKCDE-CGKAFSQStSLCIHQRVH    271  

//