hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-16183471/chunk_1/iprscan-20090618-16183471.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk01620 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01031.10.ls Dynamin central region 539.4 3.6e-159 1 PF01031.10.fs Dynamin central region 537.5 1.3e-158 1 PF00350.13.ls Dynamin family 311.5 1.4e-90 1 PF00350.13.fs Dynamin family 309.7 5e-90 1 PF02212.8.fs Dynamin GTPase effector domain 167.1 3e-48 1 PF02212.8.ls Dynamin GTPase effector domain 169.0 1.1e-47 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00350.13.fs 1/1 41 243 .. 1 217 [] 309.7 5e-90 PF00350.13.ls 1/1 41 243 .. 1 217 [] 311.5 1.4e-90 PF01031.10.fs 1/1 252 543 .. 1 299 [] 537.5 1.3e-158 PF01031.10.ls 1/1 252 543 .. 1 299 [] 539.4 3.6e-159 PF02212.8.fs 1/1 654 745 .. 1 98 [] 167.1 3e-48 PF02212.8.ls 1/1 654 745 .. 1 98 [] 169.0 1.1e-47 Alignments of top-scoring domains: PF00350.13.fs: domain 1 of 1, from 41 to 243: score 309.7, E = 5e-90 *->IaVvGdqSsGKSSvLnaLlGrdfnLPhrgpgEptTrrplvTlql... I+VvG qSsGKSSvL++L+Grd+ LP rg+g ++Trrpl+ lql + hk01620 41 IVVVGTQSSGKSSVLESLVGRDL-LP-RGTG-IVTRRPLI-LQLvhv 83 ..................gespeaieivsipgavkveykdflh.plkkfe +++++++++++++++ + ++s +++ g +e++ flh+++k+++ hk01620 84 sqedkrkttgeendpatwKNSRHLSK-----GVEAEEWGKFLHtKNKLYT 128 dfsevreeieketdriagknkgisseGalakvsfgavkyCnfskpiilei df+e+r+eie+et+ri+g+nkg+s+e pi+l+i hk01620 129 DFDEIRQEIENETERISGNNKGVSPE------------------PIHLKI 160 lsplvpgltLVDtPGldslSvavgdqqPeDieeqIrelteeyiskpadiI +sp+v++ltLVD+PG ++ v+vgdq P+Die qIrel++++is+p++iI hk01620 161 FSPNVVNLTLVDLPGMTK--VPVGDQ-PKDIELQIRELILRFISNPNSII 207 LaVvpAnvaLdlstssdealflarevdpkgerdktigVltKd<-* LaV+ An+ d++ts eal+++revdp+g+r t+ V+tK+ hk01620 208 LAVTAANT--DMATS--EALKISREVDPDGRR--TLAVITKL 243 PF00350.13.ls: domain 1 of 1, from 41 to 243: score 311.5, E = 1.4e-90 *->IaVvGdqSsGKSSvLnaLlGrdfnLPhrgpgEptTrrplvTlql... I+VvG qSsGKSSvL++L+Grd+ LP rg+g ++Trrpl+ lql + hk01620 41 IVVVGTQSSGKSSVLESLVGRDL-LP-RGTG-IVTRRPLI-LQLvhv 83 ..................gespeaieivsipgavkveykdflh.plkkfe +++++++++++++++ + ++s +++ g +e++ flh+++k+++ hk01620 84 sqedkrkttgeendpatwKNSRHLSK-----GVEAEEWGKFLHtKNKLYT 128 dfsevreeieketdriagknkgisseGalakvsfgavkyCnfskpiilei df+e+r+eie+et+ri+g+nkg+s+e pi+l+i hk01620 129 DFDEIRQEIENETERISGNNKGVSPE------------------PIHLKI 160 lsplvpgltLVDtPGldslSvavgdqqPeDieeqIrelteeyiskpadiI +sp+v++ltLVD+PG ++ v+vgdq P+Die qIrel++++is+p++iI hk01620 161 FSPNVVNLTLVDLPGMTK--VPVGDQ-PKDIELQIRELILRFISNPNSII 207 LaVvpAnvaLdlstssdealflarevdpkgerdktigVltKd<-* LaV+ An+ d++ts eal+++revdp+g+r t+ V+tK+ hk01620 208 LAVTAANT--DMATS--EALKISREVDPDGRR--TLAVITKL 243 PF01031.10.fs: domain 1 of 1, from 252 to 543: score 537.5, E = 1.3e-158 *->avDiLrNrViPLkkGYmgVvNRGQqDIqekkSlteALqkErkFFenH a+D+L++rViP+k+G +gVvNR+Q DI++kkS+t+++++E++F +++ hk01620 252 AMDVLMGRVIPVKLGIIGVVNRSQLDINNKKSVTDSIRDEYAFLQKK 298 PsYrtLadrggaTvPyLAkkLtqeLvsHIrktLPdLenqInetlqqtekE Y++La+r+g+ +yLA++L+++L++HIr++LP+L+++In++ q++ hk01620 299 --YPSLANRNGT--KYLARTLNRLLMHHIRDCLPELKTRINVLAAQYQSL 344 LqkYGadipedeaeKtafLlqkItaFnqdiislieGeekevstnElrgGa L++YG + ++K+a+Llq+It+F+++++++ieG++k+++t+El+gGa hk01620 345 LNSYG---EP-VDDKSATLLQLITKFATEYCNTIEGTAKYIETSELCGGA 390 rIryiFhewfghllesfdpdeklirsdIrtaernyrGrelpLFvpykaFE rI+yiFhe+fg++les+dp+++l++ dI ta+rn++G++++LFvp+++FE hk01620 391 RICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATGPRPALFVPEVSFE 440 viVKkQIkrLeEPalkcvelVteelrkifhqcsN.stkefsrFpnLrraa ++VK+QIkrLeEP+l+cvelV+ee+++i+++csN st+e+ rFp+L++a+ hk01620 441 LLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNySTQELLRFPKLHDAI 490 kekiedilreqeepaekmIrllfdmEqiyyntdhpyfiglqkarekeaek +e+++++lr+++ +++m+++l+++E++y+nt+hp+f ++++ +++++e+ hk01620 491 VEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEE 540 ekk<-* +++ hk01620 541 QRR 543 PF01031.10.ls: domain 1 of 1, from 252 to 543: score 539.4, E = 3.6e-159 *->avDiLrNrViPLkkGYmgVvNRGQqDIqekkSlteALqkErkFFenH a+D+L++rViP+k+G +gVvNR+Q DI++kkS+t+++++E++F +++ hk01620 252 AMDVLMGRVIPVKLGIIGVVNRSQLDINNKKSVTDSIRDEYAFLQKK 298 PsYrtLadrggaTvPyLAkkLtqeLvsHIrktLPdLenqInetlqqtekE Y++La+r+g+ +yLA++L+++L++HIr++LP+L+++In++ q++ hk01620 299 --YPSLANRNGT--KYLARTLNRLLMHHIRDCLPELKTRINVLAAQYQSL 344 LqkYGadipedeaeKtafLlqkItaFnqdiislieGeekevstnElrgGa L++YG + ++K+a+Llq+It+F+++++++ieG++k+++t+El+gGa hk01620 345 LNSYG---EP-VDDKSATLLQLITKFATEYCNTIEGTAKYIETSELCGGA 390 rIryiFhewfghllesfdpdeklirsdIrtaernyrGrelpLFvpykaFE rI+yiFhe+fg++les+dp+++l++ dI ta+rn++G++++LFvp+++FE hk01620 391 RICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATGPRPALFVPEVSFE 440 viVKkQIkrLeEPalkcvelVteelrkifhqcsN.stkefsrFpnLrraa ++VK+QIkrLeEP+l+cvelV+ee+++i+++csN st+e+ rFp+L++a+ hk01620 441 LLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNySTQELLRFPKLHDAI 490 kekiedilreqeepaekmIrllfdmEqiyyntdhpyfiglqkarekeaek +e+++++lr+++ +++m+++l+++E++y+nt+hp+f ++++ +++++e+ hk01620 491 VEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEE 540 ekk<-* +++ hk01620 541 QRR 543 PF02212.8.fs: domain 1 of 1, from 654 to 745: score 167.1, E = 3e-48 *->qeeseleeIklllkSYfnivrktladqvPKaImyllvnefKdslqnF +e++++e+I +l+kSYf ivrk+++d+vPKa+m++lvn++Kd+lq+ hk01620 654 REQRDCEVIERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKDTLQS- 699 QKellakLykPrakelfdeLLeEspeiaskRkelkkrLerLkkArqiise el+ +Lyk ++l+d+LL+Es+++a++Rke +++L++L+ A+qii+e hk01620 700 --ELVGQLYK---SSLLDDLLTESEDMAQRRKEAADMLKALQGASQIIAE 744 v<-* + hk01620 745 I 745 PF02212.8.ls: domain 1 of 1, from 654 to 745: score 169.0, E = 1.1e-47 *->qeeseleeIklllkSYfnivrktladqvPKaImyllvnefKdslqnF +e++++e+I +l+kSYf ivrk+++d+vPKa+m++lvn++Kd+lq+ hk01620 654 REQRDCEVIERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKDTLQS- 699 QKellakLykPrakelfdeLLeEspeiaskRkelkkrLerLkkArqiise el+ +Lyk ++l+d+LL+Es+++a++Rke +++L++L+ A+qii+e hk01620 700 --ELVGQLYK---SSLLDDLLTESEDMAQRRKEAADMLKALQGASQIIAE 744 v<-* + hk01620 745 I 745 //