hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-16183471/chunk_1/iprscan-20090618-16183471.nocrc
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Query sequence: hk01620
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00053                                                 417.5   7.5e-121   1
SM00302                                                 165.8    4.3e-45   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00053     1/1      14   281 ..     1   246 []   417.5 7.5e-121
SM00302     1/1     654   745 ..     1    97 []   165.8  4.3e-45

Alignments of top-scoring domains:
SM00053: domain 1 of 1, from 14 to 281: score 417.5, E = 7.5e-121
                   *->mekliplvnklqdafssLGiekdLdLPqIAVvGgQSaGKSSvLEnlv
                      me lip++nklqd+f  +G +    LPqI VvG QS+GKSSvLE lv
     hk01620    14    MEALIPVINKLQDVFNTVGADI-IQLPQIVVVGTQSSGKSSVLESLV 59   

                   GkdFLPRGsGIVTRrPLiLkLiki..........................
                   G+d LPRG GIVTRrPLiL+L+ ++++++++++++++++ + +++++ ++
     hk01620    60 GRDLLPRGTGIVTRRPLILQLVHVsqedkrkttgeendpatwknsrhlsk 109  

                   .PtstEykeflhykniskklqhfdEvrneIenetDrVtGtnkgISgvlIn
                   +    E++ flh kn  k +++fdE+r+eIenet r+ G nkg+S+++I 
     hk01620   110 gVEAEEWGKFLHTKN--KLYTDFDEIRQEIENETERISGNNKGVSPEPIH 157  

                   LrvySPyVlnLTLIDLPGitkVavgdQPqDIeeQIKklIkkfIskeetli
                   L+++SP V nLTL+DLPG+tkV+vgdQP+DIe QI++lI++fIs   ++i
     hk01620   158 LKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSII 207  

                   LaVvPaNvDlAnsdALKlAkEVDPkGeRTiGviTKlDLvDeGTdeYardi
                   LaV+ aN+D+A+s+ALK+ +EVDP G RT+ viTKlDL+D GTd  a d+
     hk01620   208 LAVTAANTDMATSEALKISREVDPDGRRTLAVITKLDLMDAGTD--AMDV 255  

                   leNkllPLRrGYigVvnRsQkDIegr<-*
                   l  +++P   G igVvnRsQ DI ++   
     hk01620   256 LMGRVIPVKLGIIGVVNRSQLDINNK    281  

SM00302: domain 1 of 1, from 654 to 745: score 165.8, E = 4.3e-45
                   *->qedseleeIksllkSYfnivrktladqvPkaImhllvneskdslqnF
                      +e++++e+I +l+kSYf ivrk+++d+vPka+mh+lvn+ kd lq+ 
     hk01620   654    REQRDCEVIERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKDTLQS- 699  

                   QellakLykpraeelldeLLeEdpeiaskRkelkkrLelLkkArqiisev
                    el+ +Lyk   ++lld+LL E++++a++Rke +++L++L+ A+qii+e+
     hk01620   700 -ELVGQLYK---SSLLDDLLTESEDMAQRRKEAADMLKALQGASQIIAEI 745  

                   <-*
                      
     hk01620     -     -    

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