hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-21012017/chunk_1/iprscan-20080812-21012017.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hk01625
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01388.11.ls ARID/BRIGHT DNA binding domain                 183.0    6.9e-52   1
PF01388.11.fs ARID/BRIGHT DNA binding domain                 181.0    2.7e-51   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01388.11.fs   1/1     253   363 ..     1   116 []   181.0  2.7e-51
PF01388.11.ls   1/1     253   363 ..     1   116 []   183.0  6.9e-52

Alignments of top-scoring domains:
PF01388.11.fs: domain 1 of 1, from 253 to 363: score 181.0, E = 2.7e-51
                   *->eaqtrerkeFldrLikFmekrgtpltkiPvvgkkeLDLYrLyrlVke
                      ++ ++erkeFld+L+ Fm+krgtp+++iP+++k++LDLY+Ly+lV+e
     hk01625   253    LDGDPERKEFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTE 299  

                   kGGfqqVtkdkkWseiareLgipdsisRGVPSsagslLrshYmryLypfE
                   kGG+++++++k W+ei+++L++p+si+     sa+++Lr++Ym+yLy++E
     hk01625   300 KGGLVEIINKKIWREITKGLNLPTSIT-----SAAFTLRTQYMKYLYAYE 344  

                   cyeeeenlrdeteaaddme<-*
                   c+++  + + e +aa+d +   
     hk01625   345 CEKKALSSPAELQAAIDGN    363  

PF01388.11.ls: domain 1 of 1, from 253 to 363: score 183.0, E = 6.9e-52
                   *->eaqtrerkeFldrLikFmekrgtpltkiPvvgkkeLDLYrLyrlVke
                      ++ ++erkeFld+L+ Fm+krgtp+++iP+++k++LDLY+Ly+lV+e
     hk01625   253    LDGDPERKEFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTE 299  

                   kGGfqqVtkdkkWseiareLgipdsisRGVPSsagslLrshYmryLypfE
                   kGG+++++++k W+ei+++L++p+si+     sa+++Lr++Ym+yLy++E
     hk01625   300 KGGLVEIINKKIWREITKGLNLPTSIT-----SAAFTLRTQYMKYLYAYE 344  

                   cyeeeenlrdeteaaddme<-*
                   c+++  + + e +aa+d +   
     hk01625   345 CEKKALSSPAELQAAIDGN    363  

//