hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-21065752/chunk_1/iprscan-20080812-21065752.nocrc
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Query sequence: hk01701
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.fs WD domain, G-beta repeat                       128.6    1.6e-35   7
PF00400.22.ls WD domain, G-beta repeat                       127.1    4.5e-35   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/7     103   123 ..    17    38 .]    12.4    0.016
PF00400.22.fs   4/7     220   259 ..     1    38 []    28.9  3.5e-07
PF00400.22.ls   4/7     220   259 ..     1    38 []    30.9  4.1e-06
PF00400.22.ls   5/7     268   306 ..     1    38 []    33.1  8.7e-07
PF00400.22.fs   5/7     268   306 ..     1    38 []    31.2  8.2e-08
PF00400.22.ls   7/7     396   434 ..     1    38 []    39.6  9.8e-09
PF00400.22.fs   7/7     396   434 ..     1    38 []    37.7  1.2e-09

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 7, from 103 to 123: score 12.4, E = 0.016
                   *->fspdsgpllasgSrDgtikiWd<-*
                      +s d g+++ s++ D ti+++d   
     hk01701   103    YSKD-GQIFMSACQDQTIRLYD    123  

PF00400.22.fs: domain 4 of 7, from 220 to 259: score 28.9, E = 3.5e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         +  ++ H++ V++vaf+  s+++l+sg++D  +k+Wd   
     hk01701   220    NRRTlQIeSHEDDVNAVAFADISSQILFSGGDDAICKVWD    259  

PF00400.22.ls: domain 4 of 7, from 220 to 259: score 30.9, E = 4.1e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         +  ++ H++ V++vaf+  s+++l+sg++D  +k+Wd   
     hk01701   220    NRRTlQIeSHEDDVNAVAFADISSQILFSGGDDAICKVWD    259  

PF00400.22.ls: domain 5 of 7, from 268 to 306: score 33.1, E = 8.7e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++++ l gH++++t ++   d  ++l+s S D tik+Wd   
     hk01701   268    PKPVgALaGHQDGITFIDSKGD-ARYLISNSKDQTIKLWD    306  

PF00400.22.fs: domain 5 of 7, from 268 to 306: score 31.2, E = 8.2e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++++ l gH++++t ++   d  ++l+s S D tik+Wd   
     hk01701   268    PKPVgALaGHQDGITFIDSKGD-ARYLISNSKDQTIKLWD    306  

PF00400.22.ls: domain 7 of 7, from 396 to 434: score 39.6, E = 9.8e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g  ++ l+ H++ V++v+++p   + ++s+S+Dg++++W    
     hk01701   396    GHIVkKLtNHKACVRDVSWHPF-EEKIVSSSWDGNLRLWQ    434  

PF00400.22.fs: domain 7 of 7, from 396 to 434: score 37.7, E = 1.2e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g  ++ l+ H++ V++v+++p   + ++s+S+Dg++++W    
     hk01701   396    GHIVkKLtNHKACVRDVSWHPF-EEKIVSSSWDGNLRLWQ    434  

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