hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-21065752/chunk_1/iprscan-20080812-21065752.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hk01701
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 157.8    1.1e-42   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/7      85   123 ..     1    46 []    14.1      2.8
SM00320    2/7     128   169 ..     1    46 []     9.7       14
SM00320    3/7     175   216 ..     1    46 []    13.1      4.2
SM00320    4/7     219   259 ..     1    46 []    33.7  2.5e-05
SM00320    5/7     267   306 ..     1    46 []    33.9  2.2e-05
SM00320    6/7     347   392 ..     1    46 []    13.0      4.3
SM00320    7/7     395   434 ..     1    46 []    40.3  2.7e-07

Alignments of top-scoring domains:
SM00320: domain 1 of 7, from 85 to 123: score 14.1, E = 2.8
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ l +t +  ++     +  +s dg      +++ s+++D tirl+
     hk01701    85    PnDLGFTDS-YSQ--KAFCGIYSKDG------QIFMSACqDQTIRLY 122  

                   d<-*
                   d   
     hk01701   123 D    123  

SM00320: domain 2 of 7, from 128 to 169: score 9.7, E = 14
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                           +++k+ +   +V++vaf pdg      n+++ +s+   i++ 
     hk01701   128    RfHKFKSIKARDVGWSVLDVAFTPDG------NHFLYSSwSDYIHIC 168  

                   d<-*
                   +   
     hk01701   169 N    169  

SM00320: domain 3 of 7, from 175 to 216: score 13.1, E = 4.2
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++     l+  +   +V s+a+s+dg      + ++ g +Dg+++++
     hk01701   175    DtHTALDLRPDERRFAVFSIAVSSDG------REVLGGAnDGCLYVF 215  

                   d<-*
                   d   
     hk01701   216 D    216  

SM00320: domain 4 of 7, from 219 to 259: score 33.7, E = 2.5e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ +  ++ H++  +V++vaf + +     +++l+sg++D  +++W
     hk01701   219    QnRRTLQIESHED--DVNAVAFADIS-----SQILFSGGdDAICKVW 258  

                   d<-*
                   d   
     hk01701   259 D    259  

SM00320: domain 5 of 7, from 267 to 306: score 33.9, E = 2.2e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++k++  l gH++  ++t ++   d       ++l+s s+D ti+lW
     hk01701   267    DpKPVGALAGHQD--GITFIDSKGDA------RYLISNSkDQTIKLW 305  

                   d<-*
                   d   
     hk01701   306 D    306  

SM00320: domain 6 of 7, from 347 to 392: score 13.0, E = 4.3
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       ++ l+t++gH   +    ++fsp +++  + ++++sg++ g++ ++
     hk01701   347    GdSSLMTYRGHGVLHTLIRCRFSPIHST--GQQFIYSGCsTGKVVVY 391  

                   d<-*
                   d   
     hk01701   392 D    392  

SM00320: domain 7 of 7, from 395 to 434: score 40.3, E = 2.7e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++  +++l+ H++   V++v+++p        + ++s+s+Dg++rlW
     hk01701   395    SgHIVKKLTNHKA--CVRDVSWHPFE------EKIVSSSwDGNLRLW 433  

                   d<-*
                       
     hk01701   434 Q    434  

//