hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090630/iprscan-20090630-18280787/chunk_1/iprscan-20090630-18280787.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk01703s1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05104.3.ls Ribosome receptor lysine/proline rich 374.6 1.4e-109 1 PF05104.3.fs Ribosome receptor lysine/proline rich 372.6 5.6e-109 1 PF03305.4.fs Mycoplasma MG185/MG260 protein 317.1 3e-92 21 PF01469.9.ls Pentapeptide repeats (8 copies) 37.2 5.2e-08 9 PF01469.9.fs Pentapeptide repeats (8 copies) 25.0 3e-06 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05104.3.ls 1/1 108 251 .. 1 144 [] 374.6 1.4e-109 PF05104.3.fs 1/1 108 251 .. 1 144 [] 372.6 5.6e-109 PF01469.9.ls 1/9 306 345 .. 1 40 [] 0.5 0.3 PF01469.9.ls 2/9 376 415 .. 1 40 [] 6.2 0.078 PF01469.9.fs 1/8 379 415 .. 4 40 .] 5.5 0.89 PF01469.9.ls 3/9 416 455 .. 1 40 [] 5.1 0.099 PF01469.9.fs 2/8 417 455 .. 1 40 [] 3.6 3 PF01469.9.ls 4/9 476 515 .. 1 40 [] 5.1 0.099 PF01469.9.fs 3/8 477 515 .. 1 40 [] 3.6 3 PF01469.9.ls 5/9 526 565 .. 1 40 [] 3.1 0.16 PF01469.9.fs 4/8 527 565 .. 1 40 [] 1.6 11 PF01469.9.ls 6/9 586 625 .. 1 40 [] 4.0 0.13 PF01469.9.fs 5/8 587 625 .. 1 40 [] 2.4 6.5 PF01469.9.ls 7/9 626 665 .. 1 40 [] 5.0 0.1 PF01469.9.fs 6/8 627 665 .. 1 40 [] 3.4 3.4 PF01469.9.ls 8/9 666 705 .. 1 40 [] 3.6 0.14 PF01469.9.fs 7/8 667 705 .. 1 40 [] 2.0 8.1 PF01469.9.ls 9/9 706 745 .. 1 40 [] 4.6 0.11 PF01469.9.fs 8/8 707 745 .. 1 40 [] 3.1 4.2 Alignments of top-scoring domains: PF05104.3.ls: domain 1 of 1, from 108 to 251: score 374.6, E = 1.4e-109 *->mKEtsYEEALAnqRKEmAKtHHqKvEKKKKEKtvEKKGKtKKKEEKP mKEtsYEEALAnqRKEmAKtHHqKvEKKKKEKtvEKKGKtKKKEEKP hk01703s1 108 MKETSYEEALANQRKEMAKTHHQKVEKKKKEKTVEKKGKTKKKEEKP 154 nGKiPeHDldPnvtvlLkEPvRvsAvAvAPtsvqssvivaPvAtvPAmPq nGKiP+HD++PnvtvlL+EPvR++AvAvAPt+vq+++ivaPvAtvPAmPq hk01703s1 155 NGKIPDHDPAPNVTVLLREPVRAPAVAVAPTPVQPPIIVAPVATVPAMPQ 204 EKLAssPKDkKKKEKKvAKvEPAvssvvnsiqvLasKaAiLEaaPKE<-* EKLAssPKDkKKKEKKvAKvEPAvssvvnsiqvL+sKaAiLE+aPKE hk01703s1 205 EKLASSPKDKKKKEKKVAKVEPAVSSVVNSIQVLTSKAAILETAPKE 251 PF05104.3.fs: domain 1 of 1, from 108 to 251: score 372.6, E = 5.6e-109 *->mKEtsYEEALAnqRKEmAKtHHqKvEKKKKEKtvEKKGKtKKKEEKP mKEtsYEEALAnqRKEmAKtHHqKvEKKKKEKtvEKKGKtKKKEEKP hk01703s1 108 MKETSYEEALANQRKEMAKTHHQKVEKKKKEKTVEKKGKTKKKEEKP 154 nGKiPeHDldPnvtvlLkEPvRvsAvAvAPtsvqssvivaPvAtvPAmPq nGKiP+HD++PnvtvlL+EPvR++AvAvAPt+vq+++ivaPvAtvPAmPq hk01703s1 155 NGKIPDHDPAPNVTVLLREPVRAPAVAVAPTPVQPPIIVAPVATVPAMPQ 204 EKLAssPKDkKKKEKKvAKvEPAvssvvnsiqvLasKaAiLEaaPKE<-* EKLAssPKDkKKKEKKvAKvEPAvssvvnsiqvL+sKaAiLE+aPKE hk01703s1 205 EKLASSPKDKKKKEKKVAKVEPAVSSVVNSIQVLTSKAAILETAPKE 251 PF01469.9.ls: domain 1 of 9, from 306 to 345: score 0.5, E = 0.3 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G N G G N G hk01703s1 306 KTEGTPNQGKKAEGTPNQGKKAEGTPNQGKKAEGAQNQGK 345 PF01469.9.ls: domain 2 of 9, from 376 to 415: score 6.2, E = 0.078 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G + G +N G G N G hk01703s1 376 KVEGAQNQGKKAEGAQNQGKKGEGAQNQGKKAEGAQNQGK 415 PF01469.9.fs: domain 1 of 8, from 379 to 415: score 5.5, E = 0.89 *->GslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G + G +N G G N G hk01703s1 379 GAQNQGKKAEGAQNQGKKGEGAQNQGKKAEGAQNQGK 415 PF01469.9.ls: domain 3 of 9, from 416 to 455: score 5.1, E = 0.099 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G hk01703s1 416 KAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGK 455 PF01469.9.fs: domain 2 of 8, from 417 to 455: score 3.6, E = 3 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G hk01703s1 417 -AEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGK 455 PF01469.9.ls: domain 4 of 9, from 476 to 515: score 5.1, E = 0.099 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G hk01703s1 476 KAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGK 515 PF01469.9.fs: domain 3 of 8, from 477 to 515: score 3.6, E = 3 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G hk01703s1 477 -AEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGK 515 PF01469.9.ls: domain 5 of 9, from 526 to 565: score 3.1, E = 0.16 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G hk01703s1 526 KAEGAQNQGRKAEGAQNQGRKAEGAQNQGKKAEGAPNQGK 565 PF01469.9.fs: domain 4 of 8, from 527 to 565: score 1.6, E = 11 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G hk01703s1 527 -AEGAQNQGRKAEGAQNQGRKAEGAQNQGKKAEGAPNQGK 565 PF01469.9.ls: domain 6 of 9, from 586 to 625: score 4.0, E = 0.13 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G hk01703s1 586 KAEGTPNQGKKAEGTPNQGKKAEGAQNQGKKAEGAQNQGK 625 PF01469.9.fs: domain 5 of 8, from 587 to 625: score 2.4, E = 6.5 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G hk01703s1 587 -AEGTPNQGKKAEGTPNQGKKAEGAQNQGKKAEGAQNQGK 625 PF01469.9.ls: domain 7 of 9, from 626 to 665: score 5.0, E = 0.1 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G hk01703s1 626 KAEGTPNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGK 665 PF01469.9.fs: domain 6 of 8, from 627 to 665: score 3.4, E = 3.4 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G hk01703s1 627 -AEGTPNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGK 665 PF01469.9.ls: domain 8 of 9, from 666 to 705: score 3.6, E = 0.14 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G hk01703s1 666 KAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQGK 705 PF01469.9.fs: domain 7 of 8, from 667 to 705: score 2.0, E = 8.1 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G hk01703s1 667 -AEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQGK 705 PF01469.9.ls: domain 9 of 9, from 706 to 745: score 4.6, E = 0.11 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G hk01703s1 706 KAEGAQNQGKKAEGAQNQGKKAEGAQNQGQKGEGAQNQGK 745 PF01469.9.fs: domain 8 of 8, from 707 to 745: score 3.1, E = 4.2 *->gNtGslNiGSGNlGsgNlGnGNiGsfNlGngNtGdgNsGd<-* G+ N G +G N G G +N G G N G hk01703s1 707 -AEGAQNQGKKAEGAQNQGKKAEGAQNQGQKGEGAQNQGK 745 //