hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-21185622/chunk_1/iprscan-20080812-21185622.nocrc
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Query sequence: hk01724
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00069.15.fs Protein kinase domain                          153.4    1.8e-43   1
PF00069.15.ls Protein kinase domain                           -5.8      3e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00069.15.ls   1/1       2   173 ..     1   287 []    -5.8    3e-08
PF00069.15.fs   1/1       5   173 ..   129   287 .]   153.4  1.8e-43

Alignments of top-scoring domains:
PF00069.15.ls: domain 1 of 1, from 2 to 173: score -5.8, E = 3e-08
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                                                                     
     hk01724     -    ----------------------------------------------- -    

                   lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse
                                                             +       
     hk01724     2 ------------------------------------------SPP----- 4    

                   trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv
                                                  gi HRDLKPeNIL+ + ++
     hk01724     5 -------------------------------GIAHRDLKPENILCEHPNQ 23   

                   vdaflKiaDFGlAkkls......t.sss.lttfvGTpwYmAPEvll....
                   v +++Ki+DF l   ++ +++ +  s ++l t++G+ +YmAPEv+   ++
     hk01724    24 V-SPVKICDFDLGSGIKlngdcsPiSTPeLLTPCGSAEYMAPEVVEafse 72   

                   ggngygtkvDvWSlGvilyelltGkpPFsgev.q.ds.l.......dqlq
                   +++ y++++D WSlGvily+ll+G+pPF g+++++ + ++++  + +q+ 
     hk01724    73 EASIYDKRCDLWSLGVILYILLSGYPPFVGRCgSdCGwDrgeacpaCQNM 122  

                   lirkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskR
                   l++ i ++++ef+   w  is            +akdLi+k+L +D ++R
     hk01724   123 LFESIQEGKYEFPDKDWAHIS-----------CAAKDLISKLLVRDAKQR 161  

                   ltaeeilqHPwf<-*
                   l+a+++lqHPw+   
     hk01724   162 LSAAQVLQHPWV    173  

PF00069.15.fs: domain 1 of 1, from 5 to 173: score 153.4, E = 1.8e-43
                   *->giiHRDLKPeNILldnngvvdaflKiaDFGlAkkls......t.sss
                      gi HRDLKPeNIL+ + ++v +++Ki+DF l   ++ +++ +  s +
     hk01724     5    GIAHRDLKPENILCEHPNQV-SPVKICDFDLGSGIKlngdcsPiSTP 50   

                   .lttfvGTpwYmAPEvll....ggngygtkvDvWSlGvilyelltGkpPF
                   +l t++G+ +YmAPEv+   +++++ y++++D WSlGvily+ll+G+pPF
     hk01724    51 eLLTPCGSAEYMAPEVVEafseEASIYDKRCDLWSLGVILYILLSGYPPF 100  

                   sgev.q.ds.l.......dqlqlirkilgpplefdspewdsisrsefrrl
                    g+++++ + ++++  + +q+ l++ i ++++ef+   w  is       
     hk01724   101 VGRCgSdCGwDrgeacpaCQNMLFESIQEGKYEFPDKDWAHIS------- 143  

                   pnlseeakdLikkcLnkDPskRltaeeilqHPwf<-*
                        +akdLi+k+L +D ++Rl+a+++lqHPw+   
     hk01724   144 ----CAAKDLISKLLVRDAKQRLSAAQVLQHPWV    173  

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