hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-21185622/chunk_1/iprscan-20080812-21185622.nocrc
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Query sequence: hk01724
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                  17.4    1.3e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00220    1/1       4   173 ..     1   231 []    17.4  1.3e-10

Alignments of top-scoring domains:
SM00220: domain 1 of 1, from 4 to 173: score 17.4, E = 1.3e-10
                   *->YellkklGkGaFGkVylardkktgrlvAiKvikerilrEikiLkkdH
                                                                     
     hk01724     -    ----------------------------------------------- -    

                   PNIVkLydvfeddklylVmEyceGdlGdLfdllkkrgrrglrkvlsEear
                                         +G                          
     hk01724     4 ----------------------PG-------------------------- 5    

                   fyfrQilsaLeYLHsqgIiHRDLKPeNiLLds.....hvKlaDFGlArql
                                    I HRDLKPeNiL+ ++++ + vK++DF l   +
     hk01724     6 -----------------IAHRDLKPENILCEHpnqvsPVKICDFDLGSGI 38   

                   ..............ttfvGTpeYmAPEvl........gYgkpavDiWSlG
                   + +++ ++ ++++  t +G+ eYmAPEv++  +++ + Y+k ++D WSlG
     hk01724    39 klngdcspistpelLTPCGSAEYMAPEVVeafseeasIYDK-RCDLWSLG 87   

                   cilyElltGkpPFp.................qldlifkkig.........
                   +ily+ll+G+pPF ++ +++ + ++++  +  ++++f+ i +++++ +++
     hk01724    88 VILYILLSGYPPFVgrcgsdcgwdrgeacpaCQNMLFESIQegkyefpdk 137  

                   .....SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                   ++ + S  akdLi+klLv+d ++Rl+a ++L+       HP++   
     hk01724   138 dwahiSCAAKDLISKLLVRDAKQRLSAaQVLQ-------HPWV    173  

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