hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-21350813/chunk_1/iprscan-20080812-21350813.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk02144 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00616.9.ls GTPase-activator protein for Ras-like GTPase 253.2 4.8e-73 1 PF00616.9.fs GTPase-activator protein for Ras-like GTPase 251.4 1.8e-72 1 PF00168.20.fs C2 domain 148.0 1.9e-43 2 PF00168.20.ls C2 domain 151.9 1.5e-42 2 PF00169.19.fs PH domain 73.5 6.7e-22 1 PF00779.9.ls BTK motif 79.7 8.3e-21 1 PF00779.9.fs BTK motif 77.7 3.3e-20 1 PF00169.19.ls PH domain 75.5 1.6e-19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00168.20.fs 1/2 42 124 .. 1 88 [] 77.9 1.3e-22 PF00168.20.ls 1/2 42 124 .. 1 88 [] 79.8 7.9e-21 PF00168.20.ls 2/2 175 275 .. 1 88 [] 72.1 1.6e-18 PF00168.20.fs 2/2 175 275 .. 1 88 [] 70.2 2.6e-20 PF00616.9.ls 1/1 379 552 .. 1 200 [] 253.2 4.8e-73 PF00616.9.fs 1/1 379 552 .. 1 200 [] 251.4 1.8e-72 PF00169.19.fs 1/1 605 705 .. 1 92 [] 73.5 6.7e-22 PF00169.19.ls 1/1 605 705 .. 1 92 [] 75.5 1.6e-19 PF00779.9.fs 1/1 707 743 .. 1 37 [] 77.7 3.3e-20 PF00779.9.ls 1/1 707 743 .. 1 37 [] 79.7 8.3e-21 Alignments of top-scoring domains: PF00168.20.fs: domain 1 of 2, from 42 to 124: score 77.9, E = 1.3e-22 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl +++++ eAknLp +++ + D+Y++v l+++++ ++Tk+++k+l hk02144 42 VKIKIGEAKNLPSYPGPSKMRDCYCTVNLDQEEV---FRTKIVEKSL 85 NPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* +P + E+F+ e p ++ + L + ++D+d f+rd ++G+v hk02144 86 CPFYGEDFYCE-IPRSFRH-LSFYIFDRDVFRRDSIIGKVA 124 PF00168.20.ls: domain 1 of 2, from 42 to 124: score 79.8, E = 7.9e-21 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl +++++ eAknLp +++ + D+Y++v l+++++ ++Tk+++k+l hk02144 42 VKIKIGEAKNLPSYPGPSKMRDCYCTVNLDQEEV---FRTKIVEKSL 85 NPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* +P + E+F+ e p ++ + L + ++D+d f+rd ++G+v hk02144 86 CPFYGEDFYCE-IPRSFRH-LSFYIFDRDVFRRDSIIGKVA 124 PF00168.20.ls: domain 2 of 2, from 175 to 275: score 72.1, E = 1.6e-18 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt L +++e+++Lp +ng +DPY++v+l g + ++ kkTkv++kt hk02144 175 LATRIVECQGLPI---VNGQCDPYATVTLAG-PFRsEAKKTKVKRKT 217 lNPvWNEtFtFevpppdlqe.tLeieVyDydrfgr............... NP+++E+F+Fev+ p +++ ++ ++d ++ + + + + ++ + + hk02144 218 NNPQFDEVFYFEVTRPCSYSkKSHFDFEEEDVDKLeirvdlwnasnlkfg 267 ddflGevs<-* d+flGe + hk02144 268 DEFLGELR 275 PF00168.20.fs: domain 2 of 2, from 175 to 275: score 70.2, E = 2.6e-20 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt L +++e+++Lp +ng +DPY++v+l g + ++ kkTkv++kt hk02144 175 LATRIVECQGLPI---VNGQCDPYATVTLAG-PFRsEAKKTKVKRKT 217 lNPvWNEtFtFevpppdlqe.tLeieVyDydrfgr............... NP+++E+F+Fev+ p +++ ++ ++d ++ + + + + ++ + + hk02144 218 NNPQFDEVFYFEVTRPCSYSkKSHFDFEEEDVDKLeirvdlwnasnlkfg 267 ddflGevs<-* d+flGe + hk02144 268 DEFLGELR 275 PF00616.9.ls: domain 1 of 1, from 379 to 552: score 253.2, E = 4.8e-73 *->llsqlieeEieektsdpntlFRgNslatkllsaYlrrvgqeYLkdtL ++s+++ E+++ t+dpnt+FRgNsla+k++++ +++ g++YL+ tL hk02144 379 FISAIASAEVKR-TQDPNTIFRGNSLASKCIDETMKLAGMHYLHVTL 424 gplireiveskedlslElDPssklydgeineeeqtgpslpleknlenLre +p i+ei++s++ +E+DP kl+dge+ le+n+enLr+ hk02144 425 KPAIEEICQSHK--PCEIDP-VKLKDGEN-----------LENNMENLRQ 460 ycekfldaIisSvdklPpelryickqiresvekkfpdakqdeaerlsavg y++++++aI++S ++P ++ i+ ++re++ k+f+d+ +d++ ++av+ hk02144 461 YVDRVFHAITESGVSCPTVMCDIFFSLREAAAKRFQDD-PDVR--YTAVS 507 gflFLRFlfcPAivsPelfglveamvtssedhpsprarRnLtliaKvLQn +f+FLRF f+PAi+sP lf+l+ ++h +p+++R+Ltli+K++Q+ hk02144 508 SFIFLRF-FAPAILSPNLFQLT-------PHHTDPQTSRTLTLISKTVQT 549 lan<-* l + hk02144 550 LGS 552 PF00616.9.fs: domain 1 of 1, from 379 to 552: score 251.4, E = 1.8e-72 *->llsqlieeEieektsdpntlFRgNslatkllsaYlrrvgqeYLkdtL ++s+++ E+++ t+dpnt+FRgNsla+k++++ +++ g++YL+ tL hk02144 379 FISAIASAEVKR-TQDPNTIFRGNSLASKCIDETMKLAGMHYLHVTL 424 gplireiveskedlslElDPssklydgeineeeqtgpslpleknlenLre +p i+ei++s++ +E+DP kl+dge+ le+n+enLr+ hk02144 425 KPAIEEICQSHK--PCEIDP-VKLKDGEN-----------LENNMENLRQ 460 ycekfldaIisSvdklPpelryickqiresvekkfpdakqdeaerlsavg y++++++aI++S ++P ++ i+ ++re++ k+f+d+ +d++ ++av+ hk02144 461 YVDRVFHAITESGVSCPTVMCDIFFSLREAAAKRFQDD-PDVR--YTAVS 507 gflFLRFlfcPAivsPelfglveamvtssedhpsprarRnLtliaKvLQn +f+FLRF f+PAi+sP lf+l+ ++h +p+++R+Ltli+K++Q+ hk02144 508 SFIFLRF-FAPAILSPNLFQLT-------PHHTDPQTSRTLTLISKTVQT 549 lan<-* l + hk02144 550 LGS 552 PF00169.19.fs: domain 1 of 1, from 605 to 705: score 73.5, E = 6.7e-22 *->vikeGwLlkkg......gkkswkkRyfvLfddvLlyykdkkkkpkgs v keG++ k+ +++++ g k++kkR+f L++ ++y+k+k++ p +s hk02144 605 VLKEGFMIKRAqgrkrfGMKNFKKRWFRLTNHEFTYHKSKGDQPLYS 651 ipLsgi.qvtkvpdn..krkncFeirt.dretlllqaeseeerkeWvkai ip+++i v+k+++ + k kn+F+++ ++r l++qa++ e+k+W++ + hk02144 652 IPIENIlAVEKLEEEsfKMKNMFQVIQpER-ALYIQANNCVEAKDWIDIL 700 qsair<-* +++ hk02144 701 TKVSQ 705 PF00169.19.ls: domain 1 of 1, from 605 to 705: score 75.5, E = 1.6e-19 *->vikeGwLlkkg......gkkswkkRyfvLfddvLlyykdkkkkpkgs v keG++ k+ +++++ g k++kkR+f L++ ++y+k+k++ p +s hk02144 605 VLKEGFMIKRAqgrkrfGMKNFKKRWFRLTNHEFTYHKSKGDQPLYS 651 ipLsgi.qvtkvpdn..krkncFeirt.dretlllqaeseeerkeWvkai ip+++i v+k+++ + k kn+F+++ ++r l++qa++ e+k+W++ + hk02144 652 IPIENIlAVEKLEEEsfKMKNMFQVIQpER-ALYIQANNCVEAKDWIDIL 700 qsair<-* +++ hk02144 701 TKVSQ 705 PF00779.9.fs: domain 1 of 1, from 707 to 743: score 77.7, E = 3.3e-20 *->NnnllqkYHPsfwvdGkwlCCqqteKnApGCkkveag<-* N+++l++YHPs++++G+wlCC++++++ApGC+++++g hk02144 707 NQKRLTVYHPSAYLSGHWLCCRAPSDSAPGCSPCTGG 743 PF00779.9.ls: domain 1 of 1, from 707 to 743: score 79.7, E = 8.3e-21 *->NnnllqkYHPsfwvdGkwlCCqqteKnApGCkkveag<-* N+++l++YHPs++++G+wlCC++++++ApGC+++++g hk02144 707 NQKRLTVYHPSAYLSGHWLCCRAPSDSAPGCSPCTGG 743 //