hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-21350813/chunk_1/iprscan-20080812-21350813.nocrc
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Query sequence: hk02144
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
SM00323                                                 566.4   1.1e-165   1
SM00239                                                 143.2    2.8e-38   2
SM00233                                                  75.1    8.4e-18   1
SM00107                                                  70.7    1.8e-16   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
SM00239          1/2      41   139 ..     1    92 []    66.2  4.1e-15
SM00239          2/2     174   290 ..     1    92 []    77.0  2.4e-18
SM00323          1/1     303   642 ..     1   390 []   566.4 1.1e-165
SM00233          1/1     605   707 ..     1    82 []    75.1  8.4e-18
SM00107          1/1     707   743 ..     1    37 []    70.7  1.8e-16

Alignments of top-scoring domains:
SM00239: domain 1 of 2, from 41 to 139: score 66.2, E = 4.1e-15
                   *->tLtvkiisArnLp.........DPYVkvs.......kTkvvkktlsg
                      ++++ki +A+nLp+ +++++ +D+Y++v  ++    +Tk+v+k+l  
     hk02144    41    SVKIKIGEAKNLPsypgpskmrDCYCTVNldqeevfRTKIVEKSL-- 85   

                   fNPvWnEesetFeFevpp..s.LeieVyDk......dfiGrvtippnnah
                    +P+++E    F+ e+p++ ++L + ++D++  +++ +iG+v i      
     hk02144    86 -CPFYGE---DFYCEIPRsfRhLSFYIFDRdvfrrdSIIGKVAIQ----- 126  

                   qhsadglihlsell.ggrh.kl<-*
                             ++l++ + ++ +   
     hk02144   127 ---------KEDLQkYHNRdTW    139  

SM00239: domain 2 of 2, from 174 to 290: score 77.0, E = 2.4e-18
                   *->tLtvkiisArnLp......DPYVkvs..........kTkvvkktlsg
                      +L  +i+++++Lp  ++  DPY++v+  ++ ++  +kTkv++kt+  
     hk02144   174    KLATRIVECQGLPivngqcDPYATVTlagpfrseakKTKVKRKTN-- 218  

                   fNPvWnEesetFeFevpp.................s.LeieVyDk.....
                    NP+++E    F+Fev+++ + +++++ + ++++ ++Lei+V  ++ ++ 
     hk02144   219 -NPQFDE---VFYFEVTRpcsyskkshfdfeeedvDkLEIRVDLWnasnl 264  

                   ....dfiGrvtippnnahqhsadglihlsell.ggrh.kl<-*
                   + +++f+G+++ip              l+ l+++  ++ +   
     hk02144   265 kfgdEFLGELRIP--------------LKVLRqSSSYeAW    290  

SM00323: domain 1 of 1, from 303 to 642: score 566.4, E = 1.1e-165
                   *->lkqgelgslrlktvyttdfilpseaYeeLleLllesvdvepltasla
                      lk+ +lgslrl++vyt+d+++ s +Y++L +Lll+s dvep++as+a
     hk02144   303    LKPDDLGSLRLNVVYTEDHVFSSDYYSPLRDLLLKSADVEPVSASAA 349  

                   saleevcsvldkdelAtkLvrlFlrrgrgkpfLraLidkEvertddpvnt
                   ++l+evc+   k+e+A +LvrlFl++gr +pf++a++++Ev+rt+dp nt
     hk02144   350 HILGEVCRE--KQEAAVPLVRLFLHYGRVVPFISAIASAEVKRTQDP-NT 396  

                   lFRgNsLatKsmevymklvGnqYLhttLkpvLkkiveekkescEvDPsKl
                   +FRgNsLa+K++++ mkl+G++YLh+tLkp + +i++++k  cE+DP+Kl
     hk02144   397 IFRGNSLASKCIDETMKLAGMHYLHVTLKPAIEEICQSHK-PCEIDPVKL 445  

                   evndviSfgdpvegedletnlenLlqyverlfdaIinSsdrlPygLRdic
                   +           +ge+le+n+enL+qyv+r+f aI+ S  ++P++++di+
     hk02144   446 K-----------DGENLENNMENLRQYVDRVFHAITESGVSCPTVMCDIF 484  

                   kqLrqaaekrFpsatqdvrykaVssFvFLRFfcPAIlSPklFnLvdehpd
                    +Lr+aa krF+++ +dvry+aVssF+FLRFf+PAIlSP+lF+L+++h d
     hk02144   485 FSLREAAAKRFQDD-PDVRYTAVSSFIFLRFFAPAILSPNLFQLTPHHTD 533  

                   pttrRtLtLiAKvlQnLANlsesksklfgsKEpwmeplfkndflkqhkdr
                   p+t+RtLtLi+K++Q+L++ls+  sk+ ++KE +m+ +++ ++++++ d+
     hk02144   534 PQTSRTLTLISKTVQTLGSLSK--SKSASFKESYMATFYEFFNEQKYADA 581  

                   vkdFLdelssvdepsesLvdkveelptkskPVstisgrelsllHslllen
                   vk+FLd +s          ++++ +p              s+ ++++l++
     hk02144   582 VKNFLDLIS----------SSGRRDP-------------KSVEQPIVLKE 608  

                   gdalkrkknnnrDHKAlgedpldkllfklryfrltthkltngk<-*
                   g+++kr+++         ++++++++fk+r+frlt+h++t++k   
     hk02144   609 GFMIKRAQG---------RKRFGMKNFKKRWFRLTNHEFTYHK    642  

SM00233: domain 1 of 1, from 605 to 707: score 75.1, E = 8.4e-18
                   *->vikeGwLlkks.......k.swkkryfvLfngvLlyyksk..kpkgs
                      v+keG++ k+ +++++ + +++kkr+f+L+n+ ++y+ksk++ p  s
     hk02144   605    VLKEGFMIKRAqgrkrfgMkNFKKRWFRLTNHEFTYHKSKgdQPLYS 651  

                   ipLsgcsvre.p.........cFeivt.drtlllqAeseeereeWvealq
                   ip++++  +e+ ++++ + +++F+++ ++r l++qA++  e+++W++ l 
     hk02144   652 IPIENILAVEkLeeesfkmknMFQVIQpERALYIQANNCVEAKDWIDILT 701  

                   saiaka<-*
                   ++++ +   
     hk02144   702 KVSQCN    707  

SM00107: domain 1 of 1, from 707 to 743: score 70.7, E = 1.8e-16
                   *->NnnllqkYHPsFwvdGkwlCCqqseKnApGCkpyeag<-*
                      N+++l++YHPs++++G+wlCC++ ++ ApGC+p+++g   
     hk02144   707    NQKRLTVYHPSAYLSGHWLCCRAPSDSAPGCSPCTGG    743  

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