hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-21423291/chunk_1/iprscan-20080812-21423291.nocrc
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Query sequence: hk02165
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00227.16.fs Proteasome A-type and B-type                 162.0    1.4e-46   1
PF00227.16.ls Proteasome A-type and B-type                 127.4    3.6e-35   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00227.16.fs   1/1      39   185 ..     1   156 [.   162.0  1.4e-46
PF00227.16.ls   1/1      39   196 .]     1   194 []   127.4  3.6e-35

Alignments of top-scoring domains:
PF00227.16.fs: domain 1 of 1, from 39 to 185: score 162.0, E = 1.4e-46
                   *->vktGtTivGikgkdGVVlAaDkRataGskllskdtveKifkiyddhi
                      v++G+Ti++i g+d++++A+D+R+++G +++++d+ +K +k+ +d++
     hk02165    39    VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDS-PKCYKL-TDKT 83   

                   gmafaGlaADartlvdyaraeaqlyrlrygrpipvevLvkriadllqvyt
                   +++++G+ +D+ tl+++++a +++y++++++ +++     +ia++l+ ++
     hk02165    84 VIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTG----AIAAMLSTIL 129  

                   qysgrrPfgvslliaGyDekggPhLyqiDpsGsyieyKdnatAiGgSGsq
                   ++++++P++v  +i+G+De+g++ +y++Dp Gsy ++   + A G S+s 
     hk02165   130 YSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRD--SFKAGG-SASA 176  

                   yAygvLEkl<-*
                   + +++L++l   
     hk02165   177 MLQPLLDNL    185  

PF00227.16.ls: domain 1 of 1, from 39 to 196: score 127.4, E = 3.6e-35
                   *->vktGtTivGikgkdGVVlAaDkRataGskllskdtveKifkiyddhi
                      v++G+Ti++i g+d++++A+D+R+++G +++++d+ +K +k+ +d++
     hk02165    39    VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDS-PKCYKL-TDKT 83   

                   gmafaGlaADartlvdyaraeaqlyrlrygrpipvevLvkriadllqvyt
                   +++++G+ +D+ tl+++++a +++y++++++ +++     +ia++l+ ++
     hk02165    84 VIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTG----AIAAMLSTIL 129  

                   qysgrrPfgvslliaGyDekggPhLyqiDpsGsyieyKdnatAiGgSGsq
                   ++++++P++v  +i+G+De+g++ +y++Dp Gsy ++   + A G S+s 
     hk02165   130 YSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRD--SFKAGG-SASA 176  

                   yAygvLEklykkedmtleeaielaikAlkeaierdalsggnievavi<-*
                   + +++L++l                       +   lsg+ + ++v    
     hk02165   177 MLQPLLDNL-----------------------D---LSGNSLSICV-    196  

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