hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-21472267/chunk_1/iprscan-20080812-21472267.nocrc
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Query sequence: hk02176
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00023.20.fs Ankyrin repeat                                 63.5      1e-16   3
PF00023.20.ls Ankyrin repeat                                 65.0    2.2e-16   3
PF00520.21.fs Ion transport protein                          35.9      1e-09   1
PF00520.21.ls Ion transport protein                          22.2    0.00069   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00023.20.fs   1/3     223   255 ..     1    33 []    31.9  6.4e-08
PF00023.20.ls   1/3     223   255 ..     1    33 []    33.9  5.1e-07
PF00023.20.ls   2/3     270   305 ..     1    33 []    25.1  0.00023
PF00023.20.fs   2/3     270   305 ..     1    33 []    23.1  1.8e-05
PF00023.20.fs   3/3     355   378 ..     1    24 [.     8.4     0.23
PF00023.20.ls   3/3     355   385 ..     1    33 []     6.0        4
PF00520.21.ls   1/1     455   705 ..     1   224 []    22.2  0.00069
PF00520.21.fs   1/1     553   705 ..    73   224 .]    35.9    1e-09

Alignments of top-scoring domains:
PF00023.20.fs: domain 1 of 3, from 223 to 255: score 31.9, E = 6.4e-08
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+LH+A++r n+ +v+lL+++GAd+ a      
     hk02176   223    KGQTALHIAIERRNMALVTLLVENGADVQAAAH    255  

PF00023.20.ls: domain 1 of 3, from 223 to 255: score 33.9, E = 5.1e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+LH+A++r n+ +v+lL+++GAd+ a      
     hk02176   223    KGQTALHIAIERRNMALVTLLVENGADVQAAAH    255  

PF00023.20.ls: domain 2 of 3, from 270 to 305: score 25.1, E = 0.00023
                   *->dGfTPLHlAalrgnlevvklLls...qGAdlnaqdd<-*
                       G+ PL lAa+ ++l +vk+Ll+++ q Ad+ a+d    
     hk02176   270    FGELPLSLAACTNQLGIVKFLLQnswQTADISARDS    305  

PF00023.20.fs: domain 2 of 3, from 270 to 305: score 23.1, E = 1.8e-05
                   *->dGfTPLHlAalrgnlevvklLls...qGAdlnaqdd<-*
                       G+ PL lAa+ ++l +vk+Ll+++ q Ad+ a+d    
     hk02176   270    FGELPLSLAACTNQLGIVKFLLQnswQTADISARDS    305  

PF00023.20.fs: domain 3 of 3, from 355 to 378: score 8.4, E = 0.23
                   *->dGfTPLHlAalrgnlevvklLlsq<-*
                       G+TPL lAa  g + v+ + l++   
     hk02176   355    KGMTPLALAAGTGKIGVLAYILQR    378  

PF00023.20.ls: domain 3 of 3, from 355 to 385: score 6.0, E = 4
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+TPL lAa  g + v+ + l+   ++        
     hk02176   355    KGMTPLALAAGTGKIGVLAYILQ--REIQEPEC    385  

PF00520.21.ls: domain 1 of 1, from 455 to 705: score 22.2, E = 0.00069
                   *->ildyvftviFtlEmllkiialgfklhsr...................
                       + y+  ++++l m++  +a++    +r+ ++ ++ + +++++  + 
     hk02176   455    RIFYFNFLVYCLYMIIFTMAAY----YRpvdglppfkmektgdyfrv 497  

                   ...........................iafkYlrspwNilDflvvlpsli
                   +++  +  ++     ++ +   +++++++  ++ s+  +l fl  l+ l+
     hk02176   498 tgeilsvlggvyfffrgiqyflqrrpsMKTLFVDSYSEMLFFLQSLFMLA 547  

                   slilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvLRllr
                   +++l                 +s+l+e +   ++ +  +l +     +l+
     hk02176   548 TVVLY----------------FSHLKEyV--ASMVFSLALGWTN---MLY 576  

                   lirrapglfRWelrtlWelnslg.rslksllnvllllllllfiFaiigvq
                   ++r+++      ++++   +++ +++l++l++++++++++lf+F+ + v 
     hk02176   577 YTRGFQQ-----MGIY--AVMIEkMILRDLCRFMFVYIVFLFGFSTAVVT 619  

                   lFggklnkcc............npingntnFdsfgnaflwlFqtmTteGw
                   l  + +n++ +++++++ + ++ +  ++++++s   ++l lF   +t+G 
     hk02176   620 LIEDGKNDSLpsestshrwrgpACRPPDSSYNSLYSTCLELF--KFTIGM 667  

                   gdvmpdtl.agtvlgyiyfvsfiilgsflllNLfiavi<-*
                   gd+  + +    ++ +i+ ++++il  +lllN++ia++   
     hk02176   668 GDLEFTENyDFKAVFIILLLAYVILTYILLLNMLIALM    705  

PF00520.21.fs: domain 1 of 1, from 553 to 705: score 35.9, E = 1e-09
                   *->dstlse.gspgllsvlrllRllRvLRllrlirrapglfRWelrtlWe
                      +s+l+e +   ++ +  +l +     +l+++r+++      ++++  
     hk02176   553    FSHLKEyV--ASMVFSLALGWTN---MLYYTRGFQQ-----MGIY-- 587  

                   lnslg.rslksllnvllllllllfiFaiigvqlFggklnkcc........
                    +++ +++l++l++++++++++lf+F+ + v l  + +n++ +++++++ 
     hk02176   588 AVMIEkMILRDLCRFMFVYIVFLFGFSTAVVTLIEDGKNDSLpsestshr 637  

                   ....npingntnFdsfgnaflwlFqtmTteGwgdvmpdtl.agtvlgyiy
                   + ++ +  ++++++s   ++l lF   +t+G gd+  + +    ++ +i+
     hk02176   638 wrgpACRPPDSSYNSLYSTCLELF--KFTIGMGDLEFTENyDFKAVFIIL 685  

                   fvsfiilgsflllNLfiavi<-*
                    ++++il  +lllN++ia++   
     hk02176   686 LLAYVILTYILLLNMLIALM    705  

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