hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-21472267/chunk_1/iprscan-20080812-21472267.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk02176 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00248 62.1 6.9e-14 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00248 1/4 176 208 .. 1 30 [] 1.6 2.8e+03 SM00248 2/4 223 252 .. 1 30 [] 28.4 0.00096 SM00248 3/4 270 302 .. 1 30 [] 15.4 8.3 SM00248 4/4 355 385 .. 1 30 [] 16.7 3.3 Alignments of top-scoring domains: SM00248: domain 1 of 4, from 176 to 208: score 1.6, E = 2.8e+03 *->dGrTpLHlAaen...gnlevvklLldkgadina<-* G+T+L A+ n ++g+ ++ lLl+ + hk02176 176 TGKTCLLKAMLNlhdGQNTTIPLLLEIARQTDS 208 SM00248: domain 2 of 4, from 223 to 252: score 28.4, E = 0.00096 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+T+LH+A+e+ n+ +v lL+++gad+ a hk02176 223 KGQTALHIAIERRNMALVTLLVENGADVQA 252 SM00248: domain 3 of 4, from 270 to 302: score 15.4, E = 8.3 *->dGrTpLHlAaengnlevvklLldkga...dina<-* G pL lAa++++l +vk+Ll+++ ++ di a hk02176 270 FGELPLSLAACTNQLGIVKFLLQNSWqtaDISA 302 SM00248: domain 4 of 4, from 355 to 385: score 16.7, E = 3.3 *->dGrTpLHlAaengnlevvklLldkga.dina<-* G+TpL lAa +g + v+ ++l++ +++++ hk02176 355 KGMTPLALAAGTGKIGVLAYILQREIqEPEC 385 //