hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-21524717/chunk_1/iprscan-20080812-21524717.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk02187 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07679.6.fs Immunoglobulin I-set domain 304.8 1.5e-88 7 PF07679.6.ls Immunoglobulin I-set domain 275.3 1.1e-79 7 PF00041.11.ls Fibronectin type III domain 189.3 8.5e-54 3 PF00041.11.fs Fibronectin type III domain 183.3 5.3e-52 3 PF00047.15.fs Immunoglobulin domain 76.1 4e-20 6 PF00047.15.ls Immunoglobulin domain 74.7 2.6e-19 4 PF07686.7.ls Immunoglobulin V-set domain 17.4 0.00086 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07679.6.ls 1/7 37 138 .. 1 96 [] 5.7 0.00037 PF07679.6.ls 2/7 231 316 .. 1 96 [] 28.2 4.8e-06 PF07679.6.fs 2/7 257 316 .. 27 96 .] 32.0 1e-08 PF07686.7.ls 1/2 320 408 .. 1 141 [] 12.3 0.0028 PF07679.6.fs 3/7 321 394 .. 1 79 [. 46.5 5.7e-13 PF07679.6.ls 3/7 321 409 .. 1 96 [] 45.5 1.7e-10 PF00047.15.ls 2/4 335 396 .. 1 65 [] 22.3 0.0016 PF00047.15.fs 3/6 335 393 .. 1 62 [. 21.9 3e-05 PF07679.6.ls 4/7 412 497 .. 1 96 [] 28.1 4.9e-06 PF07679.6.fs 4/7 412 482 .. 1 79 [. 41.4 1.8e-11 PF07679.6.ls 5/7 512 595 .. 1 96 [] 62.7 1.1e-15 PF07679.6.fs 5/7 514 595 .. 10 96 .] 70.0 8.1e-20 PF00041.11.fs 1/3 599 685 .. 1 84 [] 58.5 3.8e-16 PF00041.11.ls 1/3 599 685 .. 1 84 [] 60.5 5.2e-15 PF00041.11.fs 2/3 697 783 .. 1 84 [] 59.1 2.5e-16 PF00041.11.ls 2/3 697 783 .. 1 84 [] 61.1 3.4e-15 PF07679.6.ls 6/7 800 889 .. 1 96 [] 18.2 3.3e-05 PF07679.6.fs 6/7 800 875 .. 1 82 [. 24.4 1.6e-06 PF00041.11.ls 3/3 893 975 .. 1 84 [] 67.8 3.3e-17 PF00041.11.fs 3/3 893 975 .. 1 84 [] 65.8 3e-18 PF07679.6.ls 7/7 1008 1097 .. 1 96 [] 86.8 6e-23 PF07679.6.fs 7/7 1008 1097 .. 1 96 [] 84.9 3.7e-24 PF00047.15.fs 6/6 1022 1082 .. 1 65 [] 42.9 5.1e-11 PF00047.15.ls 4/4 1022 1082 .. 1 65 [] 44.8 2.7e-10 Alignments of top-scoring domains: PF07679.6.ls: domain 1 of 7, from 37 to 138: score 5.7, E = 0.00037 *->PkFtqkpkdveVqeGesarfeCkVtGtP...ePtVsWfKd...Gqpl F+ kp+ +V++Ge+++f kV+ + ++Pt+ WfK++ + hk02187 37 ILFIEKPQGGTVKVGEDITFIAKVKAEDllrKPTIKWFKGkwmDLAS 83 ssvllpsdrfkvtydg..GsgtytLtIsnvqpdD..sGkYtCvAtNsaGe ++ +++++ +++ +++s yt++++ ++ D+ +G Y+C +t + hk02187 84 KA----GKHLQLKETFerHSRVYTFEMQIIKAKDnfAGNYRCEVTYKDKF 129 aeasaeLtV<-* +++s+ L V hk02187 130 DSCSFDLEV 138 PF07679.6.ls: domain 2 of 7, from 231 to 316: score 28.2, E = 4.8e-06 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll F ++++ +V G ++rf ++ +P+ +V W+K+Gq++++ hk02187 231 AAFAKILdPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRP--- 273 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV s ++ + ++g L+I+n+q+ D +Y ++A G ++s eL V hk02187 274 -STKYIFEHKG--CQRILFINNCQMTDDSEYYVTA----GDEKCSTELFV 316 <-* hk02187 - - PF07679.6.fs: domain 2 of 7, from 257 to 316: score 32.0, E = 1e-08 *->tPePtVsWfKdGqplssvllpsdrfkvtydgGsgtytLtIsnvqpdD +P+ +V W+K+Gq++++ s ++ + ++g L+I+n+q+ D hk02187 257 DPKLEVKWYKNGQEIRP----STKYIFEHKG--CQRILFINNCQMTD 297 sGkYtCvAtNsaGeaeasaeLtV<-* +Y ++A G ++s eL V hk02187 298 DSEYYVTA----GDEKCSTELFV 316 PF07686.7.ls: domain 1 of 2, from 320 to 408: score 12.3, E = 0.0028 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss ++ vt + + t+ G++v+L C +s +d hk02187 320 PIMVTK-QLE------------DTTAYCGERVELECEVS---EDD-- 348 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls ++ + W++ + +e +++++r++ rv+ hk02187 349 --AN--VKWFK-------------------NGEEIIPGPKSRYRIRVE-- 373 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* +++ L I ++ +D + Y + ++ +L V hk02187 374 ----GKKHILIIEGATKADAAEYSVMTTG-----GQSSAKLSVD 408 PF07679.6.fs: domain 3 of 7, from 321 to 394: score 46.5, E = 5.7e-13 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp t++++d ++ Ge++++eC+V+ + + V WfK+G+++ + p hk02187 321 IMVTKQLEDTTAYCGERVELECEVSED-DANVKWFKNGEEIIP--GP 364 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtC<-* +r++++++g + + L+I +++++D+ +Y++ hk02187 365 KSRYRIRVEG--KKHILIIEGATKADAAEYSV 394 PF07679.6.ls: domain 3 of 7, from 321 to 409: score 45.5, E = 1.7e-10 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp t++++d ++ Ge++++eC+V+ + + V WfK+G+++ + p hk02187 321 IMVTKQLEDTTAYCGERVELECEVSED-DANVKWFKNGEEIIP--GP 364 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< +r++++++g + + L+I +++++D+ +Y++ t +G+++a+ ++ hk02187 365 KSRYRIRVEG--KKHILIIEGATKADAAEYSVMTT--GGQSSAKLSVDL 409 -* hk02187 - - PF00047.15.ls: domain 2 of 4, from 335 to 396: score 22.3, E = 0.0016 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge+v L C+v + +d++v W++ng ++++g +++ ++ ++ + + hk02187 335 GERVELECEV---SEDDANVKWFKNGEeIIpGPKSR-YRIRVEGKKH 377 tsLtitnvtpeDggtYtCvv<-* + L i +t+ D+++Y+ + hk02187 378 I-LIIEGATKADAAEYSVMT 396 PF00047.15.fs: domain 3 of 6, from 335 to 393: score 21.9, E = 3e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge+v L C+v + +d++v W++ng ++++g +++ ++ ++ + + hk02187 335 GERVELECEV---SEDDANVKWFKNGEeIIpGPKSR-YRIRVEGKKH 377 tsLtitnvtpeDggtYt<-* + L i +t+ D+++Y+ hk02187 378 I-LIIEGATKADAAEYS 393 PF07679.6.ls: domain 4 of 7, from 412 to 497: score 28.1, E = 4.9e-06 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp k+++++ d++V+ G+ + + C+++ + P W+K+G p+++ hk02187 412 LKILTPLTDQTVNLGKEICLKCEISEN-IPG-KWTKNGLPVQE---- 452 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCv..AtNsaGeaeasaeLt sdr+kv+++g +++L+I n+ +D+G Y++ ++A N ++ a+++ hk02187 453 SDRLKVVHKG--RIHKLVIANALTEDEGDYVFApdAYN----VTLPAKVH 496 V<-* V hk02187 497 V 497 PF07679.6.fs: domain 4 of 7, from 412 to 482: score 41.4, E = 1.8e-11 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp k+++++ d++V+ G+ + + C+++ + P W+K+G p+++ hk02187 412 LKILTPLTDQTVNLGKEICLKCEISEN-IPG-KWTKNGLPVQE---- 452 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtC<-* sdr+kv+++g +++L+I n+ +D+G Y++ hk02187 453 SDRLKVVHKG--RIHKLVIANALTEDEGDYVF 482 PF07679.6.ls: domain 5 of 7, from 512 to 595: score 62.7, E = 1.1e-15 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp v+V G +r+e ++G+P+P+ W ++++ + + hk02187 512 -------NTVTVIAGNKLRLEIPISGEPPPKAMWSRGDKAIME---G 548 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< s+r++ + +tL+I+ +++dDsG+Y + +N+aGea as++++V hk02187 549 SGRIRTESYP--DSSTLVIDIAERDDSGVYHINLKNEAGEAHASIKVKV 595 -* hk02187 - - PF07679.6.fs: domain 5 of 7, from 514 to 595: score 70.0, E = 8.1e-20 *->veVqeGesarfeCkVtGtPePtVsWfKdGqplssvllpsdrfkvtyd v+V G +r+e ++G+P+P+ W ++++ + + s+r++ hk02187 514 VTVIAGNKLRLEIPISGEPPPKAMWSRGDKAIME---GSGRIRTESY 557 gGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV<-* + +tL+I+ +++dDsG+Y + +N+aGea as++++V hk02187 558 P--DSSTLVIDIAERDDSGVYHINLKNEAGEAHASIKVKV 595 PF00041.11.fs: domain 1 of 3, from 599 to 685: score 58.5, E = 3.8e-16 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge P++P +tvt+v+++ +W+pP +g++pi gY ++ ++k ++ hk02187 599 PDPPVAPTVTEVGDDWCIMNWEPPAydGGSPILGYFIER-KKKQSSR 644 wkelt..vpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* w +l+ ++ + t +++ + +g+ Y+vr+ Avn++G +++S hk02187 645 WMRLNfdLCKET-TFEPKKMIEGVAYEVRIFAVNAIGiSKPS 685 PF00041.11.ls: domain 1 of 3, from 599 to 685: score 60.5, E = 5.2e-15 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge P++P +tvt+v+++ +W+pP +g++pi gY ++ ++k ++ hk02187 599 PDPPVAPTVTEVGDDWCIMNWEPPAydGGSPILGYFIER-KKKQSSR 644 wkelt..vpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* w +l+ ++ + t +++ + +g+ Y+vr+ Avn++G +++S hk02187 645 WMRLNfdLCKET-TFEPKKMIEGVAYEVRIFAVNAIGiSKPS 685 PF00041.11.fs: domain 2 of 3, from 697 to 783: score 59.1, E = 2.5e-16 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge s+Pt ltv +vt+t++t +W pP++ g + ++gY ++y + +++++ hk02187 697 TSPPTLLTVDSVTDTTVTMRWRPPDhiGAAGLDGYVLEY-CFEGTED 742 wkelt...vpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* w +++ +++t+ +t+tgL + + vrV+Avn++G +++ hk02187 743 WIVANkdlIDKTK--FTITGLPTDAKIFVRVKAVNAAGaSEPK 783 PF00041.11.ls: domain 2 of 3, from 697 to 783: score 61.1, E = 3.4e-15 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge s+Pt ltv +vt+t++t +W pP++ g + ++gY ++y + +++++ hk02187 697 TSPPTLLTVDSVTDTTVTMRWRPPDhiGAAGLDGYVLEY-CFEGTED 742 wkelt...vpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* w +++ +++t+ +t+tgL + + vrV+Avn++G +++ hk02187 743 WIVANkdlIDKTK--FTITGLPTDAKIFVRVKAVNAAGaSEPK 783 PF07679.6.ls: domain 6 of 7, from 800 to 889: score 18.2, E = 3.3e-05 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll ++ +++++ ++Ge++++ +G P P+ +W+KdG ++ hk02187 800 IRIPRHLkQTYIRRVGEAVNLVIPFQGKPRPELTWKKDGAEIDK--- 843 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV + +++++++ ++ +I++++++ sGkY +++ +as+ ++ hk02187 844 N--QINIRNSE--TDTIIFIRKAERSHSGKYDLQVKVDKFVETASIDIQI 889 <-* hk02187 - - PF07679.6.fs: domain 6 of 7, from 800 to 875: score 24.4, E = 1.6e-06 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll ++ +++++ ++Ge++++ +G P P+ +W+KdG ++ hk02187 800 IRIPRHLkQTYIRRVGEAVNLVIPFQGKPRPELTWKKDGAEIDK--- 843 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAt<-* + +++++++ ++ +I++++++ sGkY +++ hk02187 844 N--QINIRNSE--TDTIIFIRKAERSHSGKYDLQVK 875 PF00041.11.ls: domain 3 of 3, from 893 to 975: score 67.8, E = 3.3e-17 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge P++P+ ++++dv + l+W+pP+++gn+ itgY+++ +k ++e hk02187 893 PGPPQIVKIEDVWGENVALTWTPPKddGNAAITGYTIQK-ADKKSME 938 wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* w++++ + ts+t+t L+ g eY +rV + n + S hk02187 939 WFTVIEHYHRTSATITELVIGNEYYFRVFSENMC--GLS 975 PF00041.11.fs: domain 3 of 3, from 893 to 975: score 65.8, E = 3e-18 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge P++P+ ++++dv + l+W+pP+++gn+ itgY+++ +k ++e hk02187 893 PGPPQIVKIEDVWGENVALTWTPPKddGNAAITGYTIQK-ADKKSME 938 wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* w++++ + ts+t+t L+ g eY +rV + n + S hk02187 939 WFTVIEHYHRTSATITELVIGNEYYFRVFSENMC--GLS 975 PF07679.6.ls: domain 7 of 7, from 1008 to 1097: score 86.8, E = 6e-23 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P Ftq++ + + G a++ C V+G+P+P+++W K+ + hk02187 1008 PMFTQPLVNTYAIAGYNATLNCSVRGNPKPKITWMKNKVAIVD---- 1050 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< ++r+++ + g +tL+I++ p D G+Y C+A N G++e +++L V hk02187 1051 DPRYRMFSNQ--GVCTLEIRKPSPYDGGTYCCKAVNDLGTVEIECKLEV 1097 -* hk02187 - - PF07679.6.fs: domain 7 of 7, from 1008 to 1097: score 84.9, E = 3.7e-24 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P Ftq++ + + G a++ C V+G+P+P+++W K+ + hk02187 1008 PMFTQPLVNTYAIAGYNATLNCSVRGNPKPKITWMKNKVAIVD---- 1050 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< ++r+++ + g +tL+I++ p D G+Y C+A N G++e +++L V hk02187 1051 DPRYRMFSNQ--GVCTLEIRKPSPYDGGTYCCKAVNDLGTVEIECKLEV 1097 -* hk02187 - - PF00047.15.fs: domain 6 of 6, from 1022 to 1082: score 42.9, E = 5.1e-11 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G +tL+Csv g+p +++tW +n+ + ++ +++ + n+g t hk02187 1022 GYNATLNCSV--RGNPKPKITWMKNKVaIVdDPRYRMFSNQGVCT-- 1064 tsLtitnvtpeDggtYtCvv<-* L i++ +p DggtY C + hk02187 1065 --LEIRKPSPYDGGTYCCKA 1082 PF00047.15.ls: domain 4 of 4, from 1022 to 1082: score 44.8, E = 2.7e-10 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G +tL+Csv g+p +++tW +n+ + ++ +++ + n+g t hk02187 1022 GYNATLNCSV--RGNPKPKITWMKNKVaIVdDPRYRMFSNQGVCT-- 1064 tsLtitnvtpeDggtYtCvv<-* L i++ +p DggtY C + hk02187 1065 --LEIRKPSPYDGGTYCCKA 1082 //