hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-21524717/chunk_1/iprscan-20080812-21524717.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk02187 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00409 222.7 3.1e-62 7 SM00060 157.0 1.9e-42 3 SM00408 79.1 5.6e-19 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/7 43 139 .. 1 58 [] 38.7 7.7e-07 SM00409 2/7 238 317 .. 1 58 [] 26.7 0.0032 SM00409 3/7 327 408 .. 1 58 [] 36.3 4e-06 SM00408 1/4 335 401 .. 1 56 [] 13.7 0.21 SM00409 4/7 418 498 .. 1 58 [] 26.9 0.0027 SM00409 5/7 511 596 .. 1 58 [] 29.5 0.00045 SM00408 2/4 517 585 .. 1 56 [] 13.9 0.2 SM00060 1/3 599 682 .. 1 69 [] 50.8 1.8e-10 SM00060 2/3 697 780 .. 1 69 [] 53.6 2.6e-11 SM00409 6/7 807 890 .. 1 58 [] 22.0 0.081 SM00408 3/4 813 879 .. 1 56 [] 7.6 0.9 SM00060 3/3 893 975 .. 1 69 [] 52.7 4.7e-11 SM00409 7/7 1014 1098 .. 1 58 [] 42.5 5.8e-08 SM00408 4/4 1020 1087 .. 1 56 [] 43.9 2.1e-08 Alignments of top-scoring domains: SM00409: domain 1 of 7, from 43 to 139: score 38.7, E = 7.7e-07 *->pp.vtvkeGesvtLtC.as........titWy............... p++ tvk+Ge++t+ +++ + ++ti+W++++ + ++ +++ hk02187 43 PQgGTVKVGEDITFIAkVKaedllrkpTIKWFkgkwmdlaskagkhl 89 ................LtI.nvtpeDsesgGtYtCaat..sgsasseqgt + + + ++++ + ++I +++ + + G+Y+C++t + + +s+ ++ hk02187 90 qlketferhsrvytfeMQIiKAKDNFA---GNYRCEVTykDKFDSC--SF 134 tLtVl<-* L+V+ hk02187 135 DLEVH 139 SM00409: domain 2 of 7, from 238 to 317: score 26.7, E = 0.0032 *->pp.vtvkeGesvtLtC.as....titWy................... p + v G++v++ + ++++ +++Wy++++ +++++ +++ hk02187 238 DPaYQVDKGGRVRFVVeLAdpklEVKWYkngqeirpstkyifehkgc 284 ...LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* ++ L I+n ++ D +Y+ +a + ++ +t+L V+ hk02187 285 qriLFInNCQMTDD---SEYYVTAG--DEKC--STELFVR 317 SM00409: domain 3 of 7, from 327 to 408: score 36.3, E = 4e-06 *->pp.vtvkeGesvtLtC.as....titWy................... +++t+ Ge+v+L+C++s ++ +++W++++ ++++++ + + hk02187 327 LEdTTAYCGERVELECeVSeddaNVKWFkngeeiipgpksryrirve 373 .....LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* ++++ L+I+++t++D+ ++Y + t ++s +++L+V hk02187 374 gkkhiLIIeGATKADA---AEYSVMTT--GGQS--SAKLSVD 408 SM00408: domain 1 of 4, from 335 to 401: score 13.7, E = 0.21 *->leGqsVtLtCpasgdpvpnItWlk..gkplp............sgst G+ V+L+C+ +++n++W+k++++ +p+++++ + + ++++ hk02187 335 --GERVELECE-VSEDDANVKWFKngEEIIPgpksryrirvegKKHI 378 LtiknvsleDsGlYtCvArNsvg<-* L i+ ++++D+ +Y+ ++ + hk02187 379 LIIEGATKADAAEYSVMTTGGQS 401 SM00409: domain 4 of 7, from 418 to 498: score 26.9, E = 0.0027 *->pp.vtvkeGesvtLtC.as...titWy.................... ++tv++G + L+C++s + +W++++ + + +++ + ++++ hk02187 418 LTdQTVNLGKEICLKCeISeniPGKWTknglpvqesdrlkvvhkgri 464 ..LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* ++L+I n+ eD+ G+Y+ a + +++ +++++V hk02187 465 hkLVIaNALTEDE---GDYVFAPDAYNVTL--PAKVHVI 498 SM00409: domain 5 of 7, from 511 to 596: score 29.5, E = 0.00045 *->pp.vtvkeGesvtLtC.as.....titWy.................. +vtv +G ++L+ ++s+ +++ W+++++ ++++ ++ + hk02187 511 DNtVTVIAGNKLRLEIpISgepppKAMWSrgdkaimegsgrirtesy 557 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++++L+I+ ++++Ds G+Y ++ +g+a++ +++++V hk02187 558 pdsstLVIdIAERDDS---GVYHINLKneAGEAHA--SIKVKVV 596 SM00408: domain 2 of 4, from 517 to 585: score 13.9, E = 0.2 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL + G+ ++L+ p sg p p +W +++k + +++++ ++++ +++stL hk02187 517 IAGNKLRLEIPISGEPPPKAMWSRgDKAIMegsgrirtesypDSSTL 563 tiknvsleDsGlYtCvArNsvg<-* i ++++DsG+Y+ N++g hk02187 564 VIDIAERDDSGVYHINLKNEAG 585 SM00060: domain 1 of 3, from 599 to 682: score 50.8, E = 1.8e-10 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.......ivgYr.. P+pP ++vt+v+++ + WepP ++++++i+gY + hk02187 599 PDPPVA---PTVTEVGDD------WCIMNWEPPaydggspILGYFie 636 .....................ytltgLkPgaepwteYefrVrAvngndaG +++++++++ + + + +++++ + +g Ye+r+ Avn+ G hk02187 637 rkkkqssrwmrlnfdlckettFEPKKMIEG----VAYEVRIFAVNA--IG 680 eg<-* ++ hk02187 681 IS 682 SM00060: domain 2 of 3, from 697 to 780: score 53.6, E = 2.6e-11 *->PgpPsnptelrvtdvtststsdltsvtlsWepP...........ivg +pP+ l+v +vt+t +vt +W pP++ + + ++++++ hk02187 697 TSPPTL---LTVDSVTDT------TVTMRWRPPdhigaagldgyVLE 734 Yr...................ytltgLkPgaepwteYefrVrAvngndaG Y ++++++ + +++ +++++t+tgL + + +rV+Avn+ aG hk02187 735 YCfegtedwivankdlidktkFTITGLPTD----AKIFVRVKAVNA--AG 778 eg<-* + hk02187 779 AS 780 SM00409: domain 6 of 7, from 807 to 890: score 22.0, E = 0.081 *->pp.vtvkeGesvtLtC.as.....titWy.................. +++ ++Ge v+L ++++++ +++tW++++ ++++ + +++ + hk02187 807 KQtYIRRVGEAVNLVIpFQgkprpELTWKkdgaeidknqinirnset 853 ...LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++ + I+++++++s G Y +++ ++ + ++ ++ +++ hk02187 854 dtiIFIrKAERSHS---GKYDLQVKvdKFVETA--SIDIQII 890 SM00408: domain 3 of 4, from 813 to 879: score 7.6, E = 0.9 *->leGqsVtLtCpasgdpvpnItWlk.gkplp..........sgstLti + G++V L p g+p p+ tW+k+g ++++++ + ++++++ i hk02187 813 RVGEAVNLVIPFQGKPRPELTWKKdGAEIDknqinirnseTDTIIFI 859 knvsleDsGlYtCvArNsvg<-* + +++++sG+Y ++ + hk02187 860 RKAERSHSGKYDLQVKVDKF 879 SM00060: domain 3 of 3, from 893 to 975: score 52.7, E = 4.7e-11 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.......ivgYr.. PgpP+ ++++dv v l+W+pP+++++ i+gY+ + hk02187 893 PGPPQI---VKIEDVWGE------NVALTWTPPkddgnaaITGYTiq 930 ....................ytltgLkPgaepwteYefrVrAvngndaGe + ++++ ++ ++ + ++++t+t L+ g eY frV +n G hk02187 931 kadkksmewftviehyhrtsATITELVIG----NEYYFRVFSENM--CGL 974 g<-* + hk02187 975 S 975 SM00409: domain 7 of 7, from 1014 to 1098: score 42.5, E = 5.8e-08 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++++ +G ++tL+C++ +++++ itW++++ ++++ + +++ hk02187 1014 LVnTYAIAGYNATLNCsVRgnpkpKITWMknkvaivddpryrmfsnq 1060 ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + +L+I++ +p D GtY C a ++ g+++ + +L+V+ hk02187 1061 gvctLEIrKPSPYDG---GTYCCKAVndLGTVEI--ECKLEVK 1098 SM00408: domain 4 of 4, from 1020 to 1087: score 43.9, E = 2.1e-08 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt + G ++tL+C ++g+p p ItW k+ + ++++ + ++++ tL+ hk02187 1020 IAGYNATLNCSVRGNPKPKITWMKnKVAIVddpryrmfsnqGVCTLE 1066 iknvsleDsGlYtCvArNsvg<-* i+ s+ D G+Y C+A N g hk02187 1067 IRKPSPYDGGTYCCKAVNDLG 1087 //