hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-21582791/chunk_1/iprscan-20080812-21582791.nocrc
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Query sequence: hk02197
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00549.10.ls CoA-ligase                                  184.2    2.9e-52   1
PF00549.10.fs CoA-ligase                                  182.3    1.1e-51   1
PF02629.9.fs CoA binding domain                           33.0    6.9e-09   1
PF02629.9.ls CoA binding domain                           34.8    2.7e-07   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF02629.9.fs   1/1     528   637 ..     1   107 []    33.0  6.9e-09
PF02629.9.ls   1/1     528   637 ..     1   107 []    34.8  2.7e-07
PF00549.10.fs   1/1     678   823 ..     1   149 []   182.3  1.1e-51
PF00549.10.ls   1/1     678   823 ..     1   149 []   184.2  2.9e-52

Alignments of top-scoring domains:
PF02629.9.fs: domain 1 of 1, from 528 to 637: score 33.0, E = 6.9e-09
                   *->lldkdtkVaviGignlGgalgnyhfkqmleygtkGvvfgVnPkkgGt
                      l+ + tk +v+G++ +   +g+  f + +       v+   + + G+
     hk02197   528    LFSRHTKAIVWGMQTR-AVQGMLDFDYVCSRDEP-SVAAMVYPFTGD 572  

                   eil.........GvPVynSVkeapeklketgvdvaiifVPapfAqeaidE
                     ++   ++++  +PV++ +++a  k++e  vdv i f   ++A + ++E
     hk02197   573 HKQkfywghkeiLIPVFKNMADAMRKHPE--VDVLINFASLRSAYDSTME 620  

                   ave.AGikgIvnitevrLgv<-*
                    +  A+i+ I +i+e   g+   
     hk02197   621 TMNyAQIRTIAIIAE---GI    637  

PF02629.9.ls: domain 1 of 1, from 528 to 637: score 34.8, E = 2.7e-07
                   *->lldkdtkVaviGignlGgalgnyhfkqmleygtkGvvfgVnPkkgGt
                      l+ + tk +v+G++ +   +g+  f + +       v+   + + G+
     hk02197   528    LFSRHTKAIVWGMQTR-AVQGMLDFDYVCSRDEP-SVAAMVYPFTGD 572  

                   eil.........GvPVynSVkeapeklketgvdvaiifVPapfAqeaidE
                     ++   ++++  +PV++ +++a  k++e  vdv i f   ++A + ++E
     hk02197   573 HKQkfywghkeiLIPVFKNMADAMRKHPE--VDVLINFASLRSAYDSTME 620  

                   ave.AGikgIvnitevrLgv<-*
                    +  A+i+ I +i+e   g+   
     hk02197   621 TMNyAQIRTIAIIAE---GI    637  

PF00549.10.fs: domain 1 of 1, from 678 to 823: score 182.3, E = 1.1e-51
                   *->akynLnPsyIgldGnIGcvVNGAGLAMATmdiIklnGggPAnfLDvG
                      + +n+++s+++++G++++v++++G+++++++iI+ ++ g+++++++G
     hk02197   678    MLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIG 724  

                   GdatpgttvtdafklilsDpnVkaIlvnIFgGIvrCdeiAdGlkeaarev
                   Gd++pg+t+ d++ +++  p Vk+I+v++++G++++++i  G+ke     
     hk02197   725 GDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEG---- 770  

                   klkvPlVvRLaGTnvdegkse.RkghagSglnilsadaacKnaALrdAak
                    l++P+V +++GT++    se ++ghag+ +n  s++a  Kn+AL +A++
     hk02197   771 RLTKPIVCWCIGTCATMFSSEvQFGHAGACANQASETAVAKNQALKEAGV 820  

                   kvV<-*
                    v+   
     hk02197   821 FVP    823  

PF00549.10.ls: domain 1 of 1, from 678 to 823: score 184.2, E = 2.9e-52
                   *->akynLnPsyIgldGnIGcvVNGAGLAMATmdiIklnGggPAnfLDvG
                      + +n+++s+++++G++++v++++G+++++++iI+ ++ g+++++++G
     hk02197   678    MLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIG 724  

                   GdatpgttvtdafklilsDpnVkaIlvnIFgGIvrCdeiAdGlkeaarev
                   Gd++pg+t+ d++ +++  p Vk+I+v++++G++++++i  G+ke     
     hk02197   725 GDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEG---- 770  

                   klkvPlVvRLaGTnvdegkse.RkghagSglnilsadaacKnaALrdAak
                    l++P+V +++GT++    se ++ghag+ +n  s++a  Kn+AL +A++
     hk02197   771 RLTKPIVCWCIGTCATMFSSEvQFGHAGACANQASETAVAKNQALKEAGV 820  

                   kvV<-*
                    v+   
     hk02197   821 FVP    823  

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