hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-22255398/chunk_1/iprscan-20080812-22255398.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hk03621
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF01068.12.fs  ATP dependent DNA ligase domain          353.0   1.2e-105   1
PF01068.12.ls  ATP dependent DNA ligase domain          355.0   1.1e-103   1
PF04675.5.ls   DNA ligase N terminus                    327.8    1.7e-95   1
PF04675.5.fs   DNA ligase N terminus                    325.9    6.5e-95   1
PF04679.6.fs   ATP dependent DNA ligase C terminal re    36.0    9.4e-10   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF04675.5.fs     1/1     318   496 ..     1   190 []   325.9  6.5e-95
PF04675.5.ls     1/1     318   496 ..     1   190 []   327.8  1.7e-95
PF01068.12.ls    1/1     573   777 ..     1   220 []   355.0 1.1e-103
PF01068.12.fs    1/1     573   777 ..     1   220 []   353.0 1.2e-105
PF04679.6.fs     1/1     802   827 ..     1    26 [.    36.0  9.4e-10

Alignments of top-scoring domains:
PF04675.5.fs: domain 1 of 1, from 318 to 496: score 325.9, E = 6.5e-95
                   *->mpfkelAetfekIEkTssRLektdlLaelfkkvlalspelDLdkvvY
                      +p++++A+tfekIE+ s+RL+++++L++l+++v+alsp  DL++v Y
     hk03621   318    VPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPP-DLLPVLY 363  

                   LilGklgPdyeGlELGiGEklLiKAlseatGitadeIeklyketGDLGlV
                   L+l+ lgP+ +GlELG+G++ L+KA+++atG++++ ++++ +e+GD+GlV
     hk03621   364 LSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLV 413  

                   AekllaksRskqrtlfifgglgkpepLTVreVydtLrkIAkatGeGSqdk
                   Ae     sRs+qr+++      +p+pLT ++V++++r+IA++tG+ S++k
     hk03621   414 AE-N---SRSTQRLML------PPPPLTASGVFSKFRDIARLTGSASTAK 453  

                   KidlikgLlvaatplEarYLiRlllgkLRiGvgeatvLdALak<-*
                   Kid+ikgL+va++++Ear+++R+l g+LR+G++e++vL+AL++   
     hk03621   454 KIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQ    496  

PF04675.5.ls: domain 1 of 1, from 318 to 496: score 327.8, E = 1.7e-95
                   *->mpfkelAetfekIEkTssRLektdlLaelfkkvlalspelDLdkvvY
                      +p++++A+tfekIE+ s+RL+++++L++l+++v+alsp  DL++v Y
     hk03621   318    VPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPP-DLLPVLY 363  

                   LilGklgPdyeGlELGiGEklLiKAlseatGitadeIeklyketGDLGlV
                   L+l+ lgP+ +GlELG+G++ L+KA+++atG++++ ++++ +e+GD+GlV
     hk03621   364 LSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLV 413  

                   AekllaksRskqrtlfifgglgkpepLTVreVydtLrkIAkatGeGSqdk
                   Ae     sRs+qr+++      +p+pLT ++V++++r+IA++tG+ S++k
     hk03621   414 AE-N---SRSTQRLML------PPPPLTASGVFSKFRDIARLTGSASTAK 453  

                   KidlikgLlvaatplEarYLiRlllgkLRiGvgeatvLdALak<-*
                   Kid+ikgL+va++++Ear+++R+l g+LR+G++e++vL+AL++   
     hk03621   454 KIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQ    496  

PF01068.12.ls: domain 1 of 1, from 573 to 777: score 355.0, E = 1.1e-103
                   *->PMLAkpfksieealkkfgggafivEeKyDGeRcvvQiHkldggevkl
                      PMLA+p+++i+e+lk+f ++af++E+KyDG R  +QiH l+ggevk+
     hk03621   573    PMLAHPTRGISEVLKRFEEAAFTCEYKYDGQR--AQIHALEGGEVKI 617  

                   fSRngeniTalyGSyFDtypelveflkeaffpdvkdfILDGEivavDpet
                   fSRn+e++T+       +yp+++ +++++++p+v++fILD E+va+D+e+
     hk03621   618 FSRNQEDNTG-------KYPDIISRIPKIKLPSVTSFILDTEAVAWDREK 660  

                   grilPFqtlgtrknkkkvdveelakkvpvcffvFDvLylnGesLtdkplk
                   ++i+PFq+l+trk +k+vd +e+   v+vc+++FD++ylnGesL+++pl 
     hk03621   661 KQIQPFQVLTTRK-RKEVDASEI--QVQVCLYAFDLIYLNGESLVREPLS 707  

                   eRrelLeeifikveipgrielaetietndveeleefleeaikeGlEGvvv
                    Rr+lL+e+f  ve +g++++a++++t+d+e ++efle+++k  +EG++v
     hk03621   708 RRRQLLRENF--VETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMV 755  

                   KdLdpdsrYepgKRrsrnWlKlK<-*
                   K+Ld d++Ye++KR s+nWlKlK   
     hk03621   756 KTLDVDATYEIAKR-SHNWLKLK    777  

PF01068.12.fs: domain 1 of 1, from 573 to 777: score 353.0, E = 1.2e-105
                   *->PMLAkpfksieealkkfgggafivEeKyDGeRcvvQiHkldggevkl
                      PMLA+p+++i+e+lk+f ++af++E+KyDG R  +QiH l+ggevk+
     hk03621   573    PMLAHPTRGISEVLKRFEEAAFTCEYKYDGQR--AQIHALEGGEVKI 617  

                   fSRngeniTalyGSyFDtypelveflkeaffpdvkdfILDGEivavDpet
                   fSRn+e++T+       +yp+++ +++++++p+v++fILD E+va+D+e+
     hk03621   618 FSRNQEDNTG-------KYPDIISRIPKIKLPSVTSFILDTEAVAWDREK 660  

                   grilPFqtlgtrknkkkvdveelakkvpvcffvFDvLylnGesLtdkplk
                   ++i+PFq+l+trk +k+vd +e+   v+vc+++FD++ylnGesL+++pl 
     hk03621   661 KQIQPFQVLTTRK-RKEVDASEI--QVQVCLYAFDLIYLNGESLVREPLS 707  

                   eRrelLeeifikveipgrielaetietndveeleefleeaikeGlEGvvv
                    Rr+lL+e+f  ve +g++++a++++t+d+e ++efle+++k  +EG++v
     hk03621   708 RRRQLLRENF--VETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMV 755  

                   KdLdpdsrYepgKRrsrnWlKlK<-*
                   K+Ld d++Ye++KR s+nWlKlK   
     hk03621   756 KTLDVDATYEIAKR-SHNWLKLK    777  

PF04679.6.fs: domain 1 of 1, from 802 to 827: score 36.0, E = 9.4e-10
                   *->rggklgsfLlGcYDpetgefqtVgKv<-*
                      r+g++g+fLl+ YD++++e+q ++Kv   
     hk03621   802    RAGRYGGFLLASYDEDSEELQAICKV    827  

//