hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-22255398/chunk_1/iprscan-20080812-22255398.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hk03621
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00574 dnl1: DNA ligase I, ATP-dependent (dnl1)       531.2   3.6e-157   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00574   1/1     377   830 ..     1   705 []   531.2 3.6e-157

Alignments of top-scoring domains:
TIGR00574: domain 1 of 1, from 377 to 830: score 531.2, E = 3.6e-157
                   *->eyGIgEklLiKalseilgipkdeiekevkedGDlgevieglfskqkq
                      e+G+g+ +L Ka+++++g++ ++  +e+ e+GD+g+v+e ++s q+ 
     hk03621   377    ELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRL 423  

                   aaylvlkprsffsapLtveeVyekLkkiasasgegsqdkkiklLksLlkr
                            +++++pLt++ V++k ++ia+++g++s  kki+++k+L+++
     hk03621   424 ---------MLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVA 464  

                   asplEakyliRliledLRiGiaektildaLakafllsderRddsPdkdva
                   ++++Ea++++R++ ++LR+G+ae+++l aL++a+ l++++ + +P   +a
     hk03621   465 CRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDA 514  

                   ........rdvfievkhpdverafnltnDLgkVakilleeglrglekdlk
                   +++++ + r+ + e++ ++++++f++++DL+ ++++lle+gl++l++++k
     hk03621   515 gkgktaeaRKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCK 564  

                   iqlgiPlKPMLAeraksieeaLkklgnRKHEmDPPYEKKFQELGLEdkfl
                   +++giPlKPMLA+++  i+e+Lk++ +                   ++f+
     hk03621   565 LSPGIPLKPMLAHPTRGISEVLKRFEE-------------------AAFT 595  

                   vEyKYDGERvQiHKLdGdevkiFSRRLeNiTyqypeilseSltefikkAf
                   +EyKYDG R+QiH L+G+evkiFSR++e++T +yp+i+s   +++++k +
     hk03621   596 CEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIIS---RIPKIK-L 641  

                   pgdikscILDGEmVaiDpetgkilPFQtLltrakrkydRQFTTidsmekk
                   p+ + s+ILD+E+Va+D e+++i+PFQ+L+tr  +++      +d++e++
     hk03621   642 PS-VTSFILDTEAVAWDREKKQIQPFQVLTTR--KRKE-----VDASEIQ 683  

                   vpvclFlvFDiLYlNGesLidePLieRReiLesIvkpipnWrieiaemid
                   v+vcl+ +FD++YlNGesL+ ePL+ RR++L++++ ++++ ++ +a++ d
     hk03621   684 VQVCLY-AFDLIYLNGESLVREPLSRRRQLLRENFVETEG-EFVFATSLD 731  

                   vsdnveelekflneaIsegcEGlmvKdlePdeaiYepGkRgwlWlKfKpd
                   + ++ e +++fl+++++++cEGlmvK+l+  +a+Ye++kR+++WlK+K+d
     hk03621   732 T-KDIEQIAEFLEQSVKDSCEGLMVKTLD-VDATYEIAKRSHNWLKLKKD 779  

                   YlegmgDtLDLVViGkdsakKdayylGLLVLDEEEYKKHQGDSEIVDHSQ
                   Yl g+gDtLDLVViG       ay+                         
     hk03621   780 YLDGVGDTLDLVVIG-------AYL------------------------- 797  

                   EKHIGkGkRtGlygsFLlacyDpesiGEKPeeFkTitKvgtGkWkkTdvv
                       G+GkR+G yg+FLla+yD++s     ee++ i+Kv  G        
     hk03621   798 ----GRGKRAGRYGGFLLASYDEDS-----EELQAICKV-LG-------- 829  

                   fTdadLqeLgekLaplkidppgsrvpsilsrskdtyaekmtkYAvnsTLy
                                                                     
     hk03621     - -------------------------------------------------- -    

                   nndepdiwfdpaivwEvtgaEitrSpaykankgkvaegkGisLRFPRfik
                                                 n                   
     hk03621   830 ------------------------------N------------------- 830  

                   drddkekkelvtsDlfegLrfRiRdDKgpeDkkRKAAPKmKKVIGIrEHL
                                                                     
     hk03621     - -------------------------------------------------- -    

                   KAPNaTtleeikelYe<-*
                                      
     hk03621     - ----------------    -    

//