hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-22310781/chunk_1/iprscan-20080812-22310781.nocrc
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Query sequence: hk03643
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08385.2.fs Dynein heavy chain, N-terminal region 1        213.5    1.6e-61   2
PF08385.2.ls Dynein heavy chain, N-terminal region 1         78.0    2.8e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08385.2.fs   1/2     275   429 ..     1   158 [.   130.8  9.1e-38
PF08385.2.ls   1/1     275   744 ..     1   619 []    78.0  2.8e-20
PF08385.2.fs   2/2     443   672 ..   263   523 ..    82.7  5.8e-24

Alignments of top-scoring domains:
PF08385.2.fs: domain 1 of 2, from 275 to 429: score 130.8, E = 9.1e-38
                   *->dsdflnsLesivnkWikqIqsvlkldrdpallegdnpgplqEIeFWk
                      d++++++Le  +++W++qI++ l+ +++++   g+n gpl+EIeFW+
     hk03643   275    DKELVQRLETSMIHWTRQIKEMLSAQETVET--GENLGPLEEIEFWR 319  

                   sreenLssIeeQLkspeVkltleiLekaKsFhatvsFksdtrglkdalne
                   +r+ +Ls+I +QL  + Vk++ +iL+ aKs +++++F  + ++++d    
     hk03643   320 NRCMDLSGISKQLVKKGVKHVESILHLAKS-SYLAPFMKLAQQIQDGSRQ 368  

                   aqdnnkfLkdLeplddlLsatdlqeitealppifhhlrliwsnSryYyts
                   aq+n +fL+ L+++ + L+   + +i + lp +++ +r iw nS++Y+t 
     hk03643   369 AQSNLTFLSILKEPYQELAFMKPKDISSKLPKLISLIRIIWVNSPHYNTR 418  

                   eRatvLlekIs<-*
                   eR+t+L++k++   
     hk03643   419 ERLTSLFRKVC    429  

PF08385.2.ls: domain 1 of 1, from 275 to 744: score 78.0, E = 2.8e-20
                   *->dsdflnsLesivnkWikqIqsvlkldrdpallegdnpgplqEIeFWk
                      d++++++Le  +++W++qI++ l+ +++++   g+n gpl+EIeFW+
     hk03643   275    DKELVQRLETSMIHWTRQIKEMLSAQETVET--GENLGPLEEIEFWR 319  

                   sreenLssIeeQLkspeVkltleiLekaKsFhatvsFksdtrglkdalne
                   +r+ +Ls+I +QL  + Vk++ +iL+ aKs +++++F  + ++++d    
     hk03643   320 NRCMDLSGISKQLVKKGVKHVESILHLAKS-SYLAPFMKLAQQIQDGSRQ 368  

                   aqdnnkfLkdLeplddlLsatdlqeitealppifhhlrliwsnSryYyts
                   aq+n +fL+ L+++ + L+   + +i + lp +++ +r iw nS++Y+t 
     hk03643   369 AQSNLTFLSILKEPYQELAFMKPKDISSKLPKLISLIRIIWVNSPHYNTR 418  

                   eRatvLlekIsNdliqqckkyLtndpsrlmsgdydefleklsvciellet
                   eR+t+L++k++                               +c+  +  
     hk03643   419 ERLTSLFRKVC-------------------------------DCQYHFAR 437  

                   wkdlykefknllrelflkkrserqekwdfienkiFgrldafleRLddile
                   w+d       +                                       
     hk03643   438 WED------GK--------------------------------------- 442  

                   fretheqfnklekleeep.avfgglkgntliegiedisenaveefqeaye
                                  ++p ++f+g +g +++  + +i++     f+  ++
     hk03643   443 ---------------QGPlPCFFGAQGPQITRNLLEIED----IFHKNLH 473  

                   nfksvdYDvLDisaeGeeewendfleFnkriddLErrlialLrdaFddak
                   +++ v   +LD++++   +w++d+++F+  i+dLE + ++l+ +aF+ ++
     hk03643   474 TLRAVRGGILDVKNT---CWHEDYNKFRAGIKDLEVMTQNLITSAFELVR 520  

                   nleemfrlLskFnkLlkRPkIrgaieDekqsrllemvkkeidqlkkiFke
                   ++ +   lL++F  L +R++I+   + +k  +l + ++ e+  +    ++
     hk03643   521 DVPHGVLLLDTFHRLASREAIKRTYD-KKAVDLYMLFNSELALVNRERNK 569  

                   qkqelefveseaddppllrnlPpnsvaGaIiWarqLerRLqepmkkleth
                                 p l        ++G+ +W++ L+rR+++ m  l+  
     hk03643   570 KW------------PDLEPYVAQ--YSGKARWVHILRRRIDRVMTCLA-- 603  

                   dlleGkgwletpe...GkkvkqkynslrkkLdtyeqqifdaWlkvevesk
                              p+ ++Gk+   +y ++ +++d+  ++ f++W + + +++
     hk03643   604 GAH------FLPRigtGKESVHTYQQMVQAIDELVRKTFQEWTS-SLDKD 646  

                   nqfsLdgpLliksivrskneleLlsVNFdpqlisLlkEvryLlllegfrv
                   ++  Ld+pLl    ++s+++ + l VNFd+          y  +l   + 
     hk03643   647 CIRRLDTPLL----RISQEKAGMLDVNFDK----------YRSHL--APF 680  

                   PssalelakkaeklypyavsLkelvrtYnkilsqlsetverkipLlapel
                   P++ l  ++ ++ ++++ +    ++ +  +++  ls+  ++  +++ +++
     hk03643   681 PYTPL--LQLSQEFHSHLLTPLFIILSLSHTICLLSS--FY--FFFSSFI 724  

                   qdidellkpGltkLtWeslnieeyie<-*
                         ++p l    ++++n  +y++   
     hk03643   725 -----FVSPHLP-PCYQHFNFTTYLK    744  

PF08385.2.fs: domain 2 of 2, from 443 to 672: score 82.7, E = 5.8e-24
                   *->eep.avfgglkgntliegiedisenaveefqeayenfksvdYDvLDi
                      ++p ++f+g +g +++  + +i++     f+  +++++ v   +LD+
     hk03643   443    QGPlPCFFGAQGPQITRNLLEIED----IFHKNLHTLRAVRGGILDV 485  

                   saeGeeewendfleFnkriddLErrlialLrdaFddaknleemfrlLskF
                   +++   +w++d+++F+  i+dLE + ++l+ +aF+ ++++ +   lL++F
     hk03643   486 KNT---CWHEDYNKFRAGIKDLEVMTQNLITSAFELVRDVPHGVLLLDTF 532  

                   nkLlkRPkIrgaieDekqsrllemvkkeidqlkkiFkeqkqelefvesea
                     L +R++I+   + +k  +l + ++ e+  +    ++            
     hk03643   533 HRLASREAIKRTYD-KKAVDLYMLFNSELALVNRERNKKW---------- 571  

                   ddppllrnlPpnsvaGaIiWarqLerRLqepmkklethdlleGkgwletp
                     p l        ++G+ +W++ L+rR+++ m  l+             p
     hk03643   572 --PDLEPYVAQ--YSGKARWVHILRRRIDRVMTCLA--GAH------FLP 609  

                   e...GkkvkqkynslrkkLdtyeqqifdaWlkvevesknqfsLdgpLlik
                   + ++Gk+   +y ++ +++d+  ++ f++W + + +++++  Ld+pLl  
     hk03643   610 RigtGKESVHTYQQMVQAIDELVRKTFQEWTS-SLDKDCIRRLDTPLL-- 656  

                   sivrskneleLlsVNFdp<-*
                     ++s+++ + l VNFd+   
     hk03643   657 --RISQEKAGMLDVNFDK    672  

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