hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-16244362/chunk_1/iprscan-20090618-16244362.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk03810 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 692.8 2.3e-205 21 PF00096.16.fs Zinc finger, C2H2 type 668.2 6e-198 22 PF01286.9.fs XPA protein N-terminal 74.7 1.5e-20 20 PF02892.5.fs BED zinc finger 69.4 8.6e-20 13 PF01096.9.fs Transcription factor S-II (TFIIS) 60.3 5.6e-18 19 PF08792.1.fs A2L zinc ribbon domain 37.4 6.9e-09 14 PF08790.1.fs LYAR-type C2HC zinc finger 24.7 2.3e-06 9 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 19.0 1.6e-05 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.ls 2/21 207 229 .. 1 24 [] 37.8 3.5e-08 PF00096.16.fs 3/22 207 229 .. 1 24 [] 35.8 1.1e-07 PF00096.16.fs 4/22 285 307 .. 1 24 [] 29.3 4.6e-06 PF00096.16.ls 3/21 285 307 .. 1 24 [] 31.3 3.1e-06 PF00096.16.ls 4/21 313 335 .. 1 24 [] 31.0 3.9e-06 PF00096.16.fs 5/22 313 335 .. 1 24 [] 29.0 5.6e-06 PF00096.16.fs 6/22 341 363 .. 1 24 [] 37.3 4.7e-08 PF00096.16.ls 5/21 341 363 .. 1 24 [] 39.3 1.2e-08 PF00096.16.ls 6/21 369 391 .. 1 24 [] 33.8 5.5e-07 PF00096.16.fs 7/22 369 391 .. 1 24 [] 31.8 1.1e-06 PF00096.16.fs 8/22 397 419 .. 1 24 [] 31.3 1.5e-06 PF00096.16.ls 7/21 397 419 .. 1 24 [] 33.3 8.1e-07 PF00096.16.fs 9/22 425 447 .. 1 24 [] 35.4 1.4e-07 PF00096.16.ls 8/21 425 447 .. 1 24 [] 37.4 4.6e-08 PF00096.16.ls 9/21 453 475 .. 1 24 [] 36.6 8.2e-08 PF00096.16.fs 10/22 453 475 .. 1 24 [] 34.6 2.3e-07 PF00096.16.ls 10/21 481 503 .. 1 24 [] 34.9 2.6e-07 PF00096.16.fs 11/22 481 503 .. 1 24 [] 32.9 6e-07 PF00096.16.fs 12/22 509 531 .. 1 24 [] 27.8 1.1e-05 PF00096.16.ls 11/21 509 531 .. 1 24 [] 29.7 9.2e-06 PF00096.16.ls 12/21 537 559 .. 1 24 [] 34.8 2.7e-07 PF00096.16.fs 13/22 537 559 .. 1 24 [] 32.8 6.2e-07 PF00096.16.fs 14/22 565 587 .. 1 24 [] 32.2 8.8e-07 PF00096.16.ls 13/21 565 587 .. 1 24 [] 34.2 4.2e-07 PF00096.16.ls 14/21 593 615 .. 1 24 [] 34.9 2.6e-07 PF00096.16.fs 15/22 593 615 .. 1 24 [] 32.9 5.9e-07 PF00096.16.ls 15/21 621 643 .. 1 24 [] 36.8 7e-08 PF00096.16.fs 16/22 621 643 .. 1 24 [] 34.8 2e-07 PF00096.16.fs 17/22 649 670 .. 1 23 [. 28.9 5.9e-06 PF00096.16.ls 16/21 649 671 .. 1 24 [] 23.9 0.00052 PF00096.16.ls 17/21 677 699 .. 1 24 [] 33.1 8.9e-07 PF00096.16.fs 18/22 677 699 .. 1 24 [] 31.2 1.6e-06 PF00096.16.ls 18/21 705 727 .. 1 24 [] 36.7 7.5e-08 PF00096.16.fs 19/22 705 727 .. 1 24 [] 34.7 2.1e-07 PF00096.16.ls 19/21 733 755 .. 1 24 [] 40.5 5.3e-09 PF00096.16.fs 20/22 733 755 .. 1 24 [] 38.5 2.1e-08 PF00096.16.fs 21/22 761 783 .. 1 24 [] 36.1 9.4e-08 PF00096.16.ls 20/21 761 783 .. 1 24 [] 38.1 2.8e-08 PF00096.16.fs 22/22 789 812 .. 1 24 [] 29.0 5.6e-06 PF00096.16.ls 21/21 789 812 .. 1 24 [] 31.0 4e-06 Alignments of top-scoring domains: PF00096.16.ls: domain 2 of 21, from 207 to 229: score 37.8, E = 3.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++snL +Hlr+H hk03810 207 YECN-ECGKAFCQNSNLSKHLRIH 229 PF00096.16.fs: domain 3 of 22, from 207 to 229: score 35.8, E = 1.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++snL +Hlr+H hk03810 207 YECN-ECGKAFCQNSNLSKHLRIH 229 PF00096.16.fs: domain 4 of 22, from 285 to 307: score 29.3, E = 4.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+Fs s+L++H+r+H hk03810 285 YECI-ECGKTFSKTSHLRAHQRIH 307 PF00096.16.ls: domain 3 of 21, from 285 to 307: score 31.3, E = 3.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+Fs s+L++H+r+H hk03810 285 YECI-ECGKTFSKTSHLRAHQRIH 307 PF00096.16.ls: domain 4 of 21, from 313 to 335: score 31.0, E = 3.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +C k+Fs+k +L H+r+H hk03810 313 YECV-ECEKTFSHKTHLSVHQRVH 335 PF00096.16.fs: domain 5 of 22, from 313 to 335: score 29.0, E = 5.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +C k+Fs+k +L H+r+H hk03810 313 YECV-ECEKTFSHKTHLSVHQRVH 335 PF00096.16.fs: domain 6 of 22, from 341 to 363: score 37.3, E = 4.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgksF+ +s L++H+r+H hk03810 341 YECN-DCGKSFTYNSALRAHQRIH 363 PF00096.16.ls: domain 5 of 21, from 341 to 363: score 39.3, E = 1.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgksF+ +s L++H+r+H hk03810 341 YECN-DCGKSFTYNSALRAHQRIH 363 PF00096.16.ls: domain 6 of 21, from 369 to 391: score 33.8, E = 5.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dC k+F ++s L++H r+H hk03810 369 YECS-DCEKTFAHNSALRAHHRIH 391 PF00096.16.fs: domain 7 of 22, from 369 to 391: score 31.8, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dC k+F ++s L++H r+H hk03810 369 YECS-DCEKTFAHNSALRAHHRIH 391 PF00096.16.fs: domain 8 of 22, from 397 to 419: score 31.3, E = 1.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+sF + s Lk+H+r+H hk03810 397 YECN-ECGRSFAHISVLKAHQRIH 419 PF00096.16.ls: domain 7 of 21, from 397 to 419: score 33.3, E = 8.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+sF + s Lk+H+r+H hk03810 397 YECN-ECGRSFAHISVLKAHQRIH 419 PF00096.16.fs: domain 9 of 22, from 425 to 447: score 35.4, E = 1.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+sF+ +s L++H+r+H hk03810 425 YECN-ECGRSFTYNSALRAHQRIH 447 PF00096.16.ls: domain 8 of 21, from 425 to 447: score 37.4, E = 4.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+sF+ +s L++H+r+H hk03810 425 YECN-ECGRSFTYNSALRAHQRIH 447 PF00096.16.ls: domain 9 of 21, from 453 to 475: score 36.6, E = 8.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dC k+F ++s Lk H+r+H hk03810 453 YECS-DCEKTFAHNSALKIHQRIH 475 PF00096.16.fs: domain 10 of 22, from 453 to 475: score 34.6, E = 2.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dC k+F ++s Lk H+r+H hk03810 453 YECS-DCEKTFAHNSALKIHQRIH 475 PF00096.16.ls: domain 10 of 21, from 481 to 503: score 34.9, E = 2.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+F ++s L++H+++H hk03810 481 YKCN-ECEKTFAHNSALRAHQNIH 503 PF00096.16.fs: domain 11 of 22, from 481 to 503: score 32.9, E = 6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+F ++s L++H+++H hk03810 481 YKCN-ECEKTFAHNSALRAHQNIH 503 PF00096.16.fs: domain 12 of 22, from 509 to 531: score 27.8, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +k L +H+r+H hk03810 509 YECS-ECGKTFFQKTRLSTHRRIH 531 PF00096.16.ls: domain 11 of 21, from 509 to 531: score 29.7, E = 9.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +k L +H+r+H hk03810 509 YECS-ECGKTFFQKTRLSTHRRIH 531 PF00096.16.ls: domain 12 of 21, from 537 to 559: score 34.8, E = 2.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs+ks L H r+H hk03810 537 YECS-KCGKTFSQKSYLSGHERIH 559 PF00096.16.fs: domain 13 of 22, from 537 to 559: score 32.8, E = 6.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs+ks L H r+H hk03810 537 YECS-KCGKTFSQKSYLSGHERIH 559 PF00096.16.fs: domain 14 of 22, from 565 to 587: score 32.2, E = 8.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F k+ L H+r+H hk03810 565 YECN-VCGKTFVYKAALIVHQRIH 587 PF00096.16.ls: domain 13 of 21, from 565 to 587: score 34.2, E = 4.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F k+ L H+r+H hk03810 565 YECN-VCGKTFVYKAALIVHQRIH 587 PF00096.16.ls: domain 14 of 21, from 593 to 615: score 34.9, E = 2.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++ +L +H+r+H hk03810 593 YECN-ECGKTFSQRTHLCAHQRIH 615 PF00096.16.fs: domain 15 of 22, from 593 to 615: score 32.9, E = 5.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++ +L +H+r+H hk03810 593 YECN-ECGKTFSQRTHLCAHQRIH 615 PF00096.16.ls: domain 15 of 21, from 621 to 643: score 36.8, E = 7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F ++s L++H r+H hk03810 621 YECN-ECGKTFADNSALRAHHRIH 643 PF00096.16.fs: domain 16 of 22, from 621 to 643: score 34.8, E = 2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F ++s L++H r+H hk03810 621 YECN-ECGKTFADNSALRAHHRIH 643 PF00096.16.fs: domain 17 of 22, from 649 to 670: score 28.9, E = 5.9e-06 *->ykCpfdCgksFsrksnLkrHlrt<-* y+C+ dCgk+Fs s+L++Hlrt hk03810 649 YECN-DCGKTFSKTSHLRAHLRT 670 PF00096.16.ls: domain 16 of 21, from 649 to 671: score 23.9, E = 0.00052 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+Fs s+L++Hlrt hk03810 649 YECN-DCGKTFSKTSHLRAHLRTR 671 PF00096.16.ls: domain 17 of 21, from 677 to 699: score 33.1, E = 8.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs ks +H+r+H hk03810 677 YECS-ECGKTFSEKSYVSAHQRVH 699 PF00096.16.fs: domain 18 of 22, from 677 to 699: score 31.2, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs ks +H+r+H hk03810 677 YECS-ECGKTFSEKSYVSAHQRVH 699 PF00096.16.ls: domain 18 of 21, from 705 to 727: score 36.7, E = 7.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F ++s+L+ H+r+H hk03810 705 YECN-VCGKPFAHNSTLRVHQRIH 727 PF00096.16.fs: domain 19 of 22, from 705 to 727: score 34.7, E = 2.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F ++s+L+ H+r+H hk03810 705 YECN-VCGKPFAHNSTLRVHQRIH 727 PF00096.16.ls: domain 19 of 21, from 733 to 755: score 40.5, E = 5.3e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+Fs+ks+L +H+r+H hk03810 733 YECN-DCGKTFSQKSHLSAHQRIH 755 PF00096.16.fs: domain 20 of 22, from 733 to 755: score 38.5, E = 2.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+Fs+ks+L +H+r+H hk03810 733 YECN-DCGKTFSQKSHLSAHQRIH 755 PF00096.16.fs: domain 21 of 22, from 761 to 783: score 36.1, E = 9.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F ++s+L+ H+r+H hk03810 761 YECN-ECGKAFAQNSTLRVHQRIH 783 PF00096.16.ls: domain 20 of 21, from 761 to 783: score 38.1, E = 2.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F ++s+L+ H+r+H hk03810 761 YECN-ECGKAFAQNSTLRVHQRIH 783 PF00096.16.fs: domain 22 of 22, from 789 to 812: score 29.0, E = 5.6e-06 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ +Cgk+F rk+ L+ H + H hk03810 789 YECD-ECGKTFVRKAALRVHHTRmH 812 PF00096.16.ls: domain 21 of 21, from 789 to 812: score 31.0, E = 4e-06 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ +Cgk+F rk+ L+ H + H hk03810 789 YECD-ECGKTFVRKAALRVHHTRmH 812 //