hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-16244362/chunk_1/iprscan-20090618-16244362.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk03810 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 559.3 1.5e-163 20 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/20 207 229 .. 1 23 [] 29.5 0.00047 SM00355 2/20 285 307 .. 1 23 [] 28.1 0.0012 SM00355 3/20 313 335 .. 1 23 [] 24.6 0.014 SM00355 4/20 341 363 .. 1 23 [] 29.8 0.00037 SM00355 5/20 369 391 .. 1 23 [] 26.4 0.004 SM00355 6/20 397 419 .. 1 23 [] 28.3 0.0011 SM00355 7/20 425 447 .. 1 23 [] 30.0 0.00033 SM00355 8/20 453 475 .. 1 23 [] 28.5 0.0009 SM00355 9/20 481 503 .. 1 23 [] 28.2 0.0012 SM00355 10/20 509 531 .. 1 23 [] 28.6 0.00085 SM00355 11/20 537 559 .. 1 23 [] 28.5 0.00089 SM00355 12/20 565 587 .. 1 23 [] 30.8 0.00018 SM00355 13/20 593 615 .. 1 23 [] 29.0 0.00065 SM00355 14/20 621 643 .. 1 23 [] 30.6 0.00022 SM00355 15/20 649 669 .. 1 23 [] 14.2 7.8 SM00355 16/20 677 699 .. 1 23 [] 27.3 0.0021 SM00355 17/20 705 727 .. 1 23 [] 28.3 0.0011 SM00355 18/20 733 755 .. 1 23 [] 30.6 0.00022 SM00355 19/20 761 783 .. 1 23 [] 29.5 0.00046 SM00355 20/20 789 812 .. 1 23 [] 28.5 0.00094 Alignments of top-scoring domains: SM00355: domain 1 of 20, from 207 to 229: score 29.5, E = 0.00047 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f++ ++L +H+r+H hk03810 207 YECNE-CGKAFCQNsNLSKHLRIH 229 SM00355: domain 2 of 20, from 285 to 307: score 28.1, E = 0.0012 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk+fs ++L+ H+r+H hk03810 285 YECIE-CGKTFSKTsHLRAHQRIH 307 SM00355: domain 3 of 20, from 313 to 335: score 24.6, E = 0.014 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + C k+fs+k++L H+rvH hk03810 313 YECVE-CEKTFSHKtHLSVHQRVH 335 SM00355: domain 4 of 20, from 341 to 363: score 29.8, E = 0.00037 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ Cgksf+ +aL+ H+r+H hk03810 341 YECND-CGKSFTYNsALRAHQRIH 363 SM00355: domain 5 of 20, from 369 to 391: score 26.4, E = 0.004 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ C k+f + +aL+ H r+H hk03810 369 YECSD-CEKTFAHNsALRAHHRIH 391 SM00355: domain 6 of 20, from 397 to 419: score 28.3, E = 0.0011 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cg+sf + + Lk H+r+H hk03810 397 YECNE-CGRSFAHIsVLKAHQRIH 419 SM00355: domain 7 of 20, from 425 to 447: score 30.0, E = 0.00033 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cg+sf+ +aL+ H+r+H hk03810 425 YECNE-CGRSFTYNsALRAHQRIH 447 SM00355: domain 8 of 20, from 453 to 475: score 28.5, E = 0.0009 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ C k+f + +aLk H+r+H hk03810 453 YECSD-CEKTFAHNsALKIHQRIH 475 SM00355: domain 9 of 20, from 481 to 503: score 28.2, E = 0.0012 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C k+f + +aL+ H+ +H hk03810 481 YKCNE-CEKTFAHNsALRAHQNIH 503 SM00355: domain 10 of 20, from 509 to 531: score 28.6, E = 0.00085 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+f +k+ L H r+H hk03810 509 YECSE-CGKTFFQKtRLSTHRRIH 531 SM00355: domain 11 of 20, from 537 to 559: score 28.5, E = 0.00089 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+fs+k+ L H r+H hk03810 537 YECSK-CGKTFSQKsYLSGHERIH 559 SM00355: domain 12 of 20, from 565 to 587: score 30.8, E = 0.00018 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+f k aL+ H+r+H hk03810 565 YECNV-CGKTFVYKaALIVHQRIH 587 SM00355: domain 13 of 20, from 593 to 615: score 29.0, E = 0.00065 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+fs++++L H+r+H hk03810 593 YECNE-CGKTFSQRtHLCAHQRIH 615 SM00355: domain 14 of 20, from 621 to 643: score 30.6, E = 0.00022 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+f + +aL+ H r+H hk03810 621 YECNE-CGKTFADNsALRAHHRIH 643 SM00355: domain 15 of 20, from 649 to 669: score 14.2, E = 7.8 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ Cgk+fs ++L+ H+r hk03810 649 YECND-CGKTFSKTsHLRAHLR-- 669 SM00355: domain 16 of 20, from 677 to 699: score 27.3, E = 0.0021 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+fs k+ H+rvH hk03810 677 YECSE-CGKTFSEKsYVSAHQRVH 699 SM00355: domain 17 of 20, from 705 to 727: score 28.3, E = 0.0011 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f + + L+ H+r+H hk03810 705 YECNV-CGKPFAHNsTLRVHQRIH 727 SM00355: domain 18 of 20, from 733 to 755: score 30.6, E = 0.00022 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ Cgk+fs+k++L H+r+H hk03810 733 YECND-CGKTFSQKsHLSAHQRIH 755 SM00355: domain 19 of 20, from 761 to 783: score 29.5, E = 0.00046 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f + + L+ H+r+H hk03810 761 YECNE-CGKAFAQNsTLRVHQRIH 783 SM00355: domain 20 of 20, from 789 to 812: score 28.5, E = 0.00094 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+C++ Cgk+f +k aL+ H ++H hk03810 789 YECDE-CGKTFVRKaALRVHHTrMH 812 //