hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-22423726/chunk_1/iprscan-20080812-22423726.nocrc
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Query sequence: hk04051
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00071.12.fs Ras family                                     271.4    1.4e-80   1
PF00071.12.ls Ras family                                     273.3    4.6e-79   1
PF08477.3.fs Miro-like protein                               71.2    3.2e-20   1
PF08477.3.ls Miro-like protein                               73.0    8.9e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08477.3.fs   1/1      43   157 ..     1   139 []    71.2  3.2e-20
PF00071.12.fs   1/1      43   204 ..     1   174 []   271.4  1.4e-80
PF08477.3.ls   1/1      43   157 ..     1   139 []    73.0  8.9e-19
PF00071.12.ls   1/1      43   204 ..     1   174 []   273.3  4.6e-79

Alignments of top-scoring domains:
PF08477.3.fs: domain 1 of 1, from 43 to 157: score 71.2, E = 3.2e-20
                   *->kvvViGdkgvGKSSllqallgeefppniPrvLpkkklpreiqgstya
                      kvv++G  +vGK+Sl+ +++  +f               + + +t++
     hk04051    43    KVVLLGEGCVGKTSLVLRYCENKFN--------------DKHITTLQ 75   

                   vd....tlevdgdtklenvrlkefllilwDtggreelkfehepiAymkta
                       +++l++ g++           l +wDt+g+e++++ + pi y  ++
     hk04051    76 ASfltkKLNIGGKRVN---------LAIWDTAGQERFHA-LGPI-YYRDS 114  

                   DavllvyDlsdpeSfervsslikwlpnlrklgkkaiPvilvgnKlD<-*
                   ++++lvyD +d++Sf+ v   + w ++lrk  +++i + +vgnK+D   
     hk04051   115 NGAILVYDITDEDSFQKV---KNWVKELRKMLGNEICLCIVGNKID    157  

PF00071.12.fs: domain 1 of 1, from 43 to 204: score 271.4, E = 1.4e-80
                   *->KlVlvGDgGVGKSsLliRFtdnkFpeeYipTIGvDFytktvevdgkt
                      K+Vl+G+g+VGK+sL++R+ +nkF++++i+T  + F+tk ++++gk+
     hk04051    43    KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKR 89   

                   vkLqIWDTAGQErFralrpaYYRgAqGfLLVYDITsrdSFenvkkWleei
                   v L IWDTAGQErF+al p YYR+++G++LVYDIT++dSF++vk+W++e+
     hk04051    90 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL 139  

                   lrhadkdenvpivLVGNKcDLeddedlelekqkRqVsteeGealAkelgA
                   +++ +  + +  ++VGNK+DLe          +R Vs +e+e +A++ g 
     hk04051   140 RKMLG--NEICLCIVGNKIDLEK---------ERHVSIQEAESYAESVG- 177  

                   lpFmETSAKtneNVeeaFeelareilk<-*
                   ++++ TSAK+n+++ee F++l +++++   
     hk04051   178 AKHYHTSAKQNKGIEELFLDLCKRMIE    204  

PF08477.3.ls: domain 1 of 1, from 43 to 157: score 73.0, E = 8.9e-19
                   *->kvvViGdkgvGKSSllqallgeefppniPrvLpkkklpreiqgstya
                      kvv++G  +vGK+Sl+ +++  +f               + + +t++
     hk04051    43    KVVLLGEGCVGKTSLVLRYCENKFN--------------DKHITTLQ 75   

                   vd....tlevdgdtklenvrlkefllilwDtggreelkfehepiAymkta
                       +++l++ g++           l +wDt+g+e++++ + pi y  ++
     hk04051    76 ASfltkKLNIGGKRVN---------LAIWDTAGQERFHA-LGPI-YYRDS 114  

                   DavllvyDlsdpeSfervsslikwlpnlrklgkkaiPvilvgnKlD<-*
                   ++++lvyD +d++Sf+ v   + w ++lrk  +++i + +vgnK+D   
     hk04051   115 NGAILVYDITDEDSFQKV---KNWVKELRKMLGNEICLCIVGNKID    157  

PF00071.12.ls: domain 1 of 1, from 43 to 204: score 273.3, E = 4.6e-79
                   *->KlVlvGDgGVGKSsLliRFtdnkFpeeYipTIGvDFytktvevdgkt
                      K+Vl+G+g+VGK+sL++R+ +nkF++++i+T  + F+tk ++++gk+
     hk04051    43    KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKR 89   

                   vkLqIWDTAGQErFralrpaYYRgAqGfLLVYDITsrdSFenvkkWleei
                   v L IWDTAGQErF+al p YYR+++G++LVYDIT++dSF++vk+W++e+
     hk04051    90 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL 139  

                   lrhadkdenvpivLVGNKcDLeddedlelekqkRqVsteeGealAkelgA
                   +++ +  + +  ++VGNK+DLe          +R Vs +e+e +A++ g 
     hk04051   140 RKMLG--NEICLCIVGNKIDLEK---------ERHVSIQEAESYAESVG- 177  

                   lpFmETSAKtneNVeeaFeelareilk<-*
                   ++++ TSAK+n+++ee F++l +++++   
     hk04051   178 AKHYHTSAKQNKGIEELFLDLCKRMIE    204  

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