hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-22423726/chunk_1/iprscan-20080812-22423726.nocrc
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Query sequence: hk04051
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00175                                                 259.8    2.1e-73   1
SM00173                                                 128.9    5.7e-34   1
SM00174                                                  42.4    1.1e-12   1
SM00176                                                  31.1    1.1e-05   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00173     1/1      39   205 ..     1   167 []   128.9  5.7e-34
SM00175     1/1      42   205 ..     1   172 []   259.8  2.1e-73
SM00174     1/1      44   205 ..     1   180 []    42.4  1.1e-12
SM00176     1/1      47   237 ..     1   202 []    31.1  1.1e-05

Alignments of top-scoring domains:
SM00173: domain 1 of 1, from 39 to 205: score 128.9, E = 5.7e-34
                   *->mreYKlVVlGgGGVGKSALTiQFiqghFvdeYDPTIEDSY.rKqiei
                         +K+V lG G VGK++L+++ +++ F d++  T   S+ +K+ +i
     hk04051    39    AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFlTKKLNI 85   

                   DgevalLDILDTAGQeEFsAMRdqYmRtGeGFlLVYSitsrqSFeeikkf
                    g+ + L I DTAGQe F A+   Y R+ +G +LVY it+ +SF+ +k+ 
     hk04051    86 GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNW 135  

                   reqIlRVKdrddvPivLVGNKcDLeneRqVsteEGkeLAkqlncpFlEtS
                    + +  + ++ ++ + +VGNK DLe eR+Vs +E+++ A++ +++ + tS
     hk04051   136 VKELRKMLGN-EICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTS 184  

                   AKerinVdeaFydLVReirks<-*
                   AK++  ++e F dL +++      
     hk04051   185 AKQNKGIEELFLDLCKRMIET    205  

SM00175: domain 1 of 1, from 42 to 205: score 259.8, E = 2.1e-73
                   *->FKiilIGDSGVGKSsLLsRFtddkFsedsksTIGVDFktktievdGk
                      FK++l+G+ +VGK+sL++R++++kF+++++ T  + F+tk ++++Gk
     hk04051    42    FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGK 88   

                   rvKLQIWDTAGQERFRSiTssYYRGAvGalLVYDiTnreSFenlknWlke
                   rv L IWDTAGQERF+++ + YYR+++Ga+LVYDiT+++SF+++knW+ke
     hk04051    89 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE 138  

                   lreyadpppenvvimLVGNKsDLeeqRqVstEeaekficDcAeehgllFi
                   lr++ ++    ++  +VGNK+DLe++R+Vs +eae +    Ae  g + +
     hk04051   139 LRKMLGN---EICLCIVGNKIDLEKERHVSIQEAESY----AESVGAKHY 181  

                   fETSAKtntNVeeAFeelakkIlkr<-*
                     TSAK n  +ee F+ l k+++ +   
     hk04051   182 -HTSAKQNKGIEELFLDLCKRMIET    205  

SM00174: domain 1 of 1, from 44 to 205: score 42.4, E = 1.1e-12
                   *->lVvVGDGaVGKTCLLisYTtnaFPedYVPTVFENYsadvev......
                      +V+ G G+VGKT+L  +Y +n+F         + ++++++ +  +++
     hk04051    44    VVLLGEGCVGKTSLVLRYCENKF--------NDKHITTLQAsfltkk 82   

                   ..pDgkpvnLgLWDTAGQEdYDRLRPLSYPqtDVfLiCFSVdspaSfeNV
                    + +gk+vnL+ WDTAGQE +  L P  Y +++  ++ ++++  +Sf+ V
     hk04051    83 lnIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV 132  

                   keKWyPEvkhfcPnvPii.LVGtKlDLRnDedtleelsekkqePvtteqG
                   k+ W+ E++    n  ++  VG+K+DL   ++ +   +e ++        
     hk04051   133 KN-WVKELRKMLGNEICLcIVGNKIDLE--KERHVSIQEAES-------- 171  

                   eanskialAkeIGAvkYlECSAltqeGvkeVFeeAiraaLnk<-*
                           A ++GA k+  +SA++++G++e F    +  ++    
     hk04051   172 -------YAESVGA-KHYHTSAKQNKGIEELFLDLCKRMIET    205  

SM00176: domain 1 of 1, from 47 to 237: score 31.1, E = 1.1e-05
                   *->vGDGGtGKttFvKRHLtGEFEKKYvatlGvEvHPLvFftnrGkirFn
                       G+G  GKt  v R     F  K + tl              ++   
     hk04051    47    LGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLA 93   

                   vWDtAGqEKFGGLRDGYYiqgqCAiimFDvtaRvtYKnvPnWHRDLvRvC
                   +WDtAGqE+F  L   YY  +  Ai+++D+t    ++ v nW ++L ++ 
     hk04051    94 IWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML 143  

                   En.iPivLCGnKvDv.KdRkvKAKqi.tFHRKKnLqYYdisAKsnYnFEK
                    n+i + + GnK+D++K+R+v  ++ + +      + Y  sAK n   E 
     hk04051   144 GNeICLCIVGNKIDLeKERHVSIQEAeSYAESVGAKHYHTSAKQNKGIEE 193  

                   PFLyLARKLlGDpnLeFvamPALAPPEvqlDiAlaakyEkDLeaAaa.aa
                    FL L ++++                  q+D  ++ +       A ++ +
     hk04051   194 LFLDLCKRMIETA---------------QVDERAKGNGSSQPGTARRgVQ 228  

                   LPDddDDdl<-*
                   + Dd+  +    
     hk04051   229 IIDDEPQAQ    237  

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