hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-22423726/chunk_1/iprscan-20080812-22423726.nocrc
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Query sequence: hk04051
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
TIGR00231 small_GTP: small GTP-binding protein domain    89.1    4.5e-24   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
TIGR00231   1/1      39   200 ..     1   186 []    89.1  4.5e-24

Alignments of top-scoring domains:
TIGR00231: domain 1 of 1, from 39 to 200: score 89.1, E = 4.5e-24
                   *->lkdikigivGdpnvGkstllnrllgnkgsitesgptdgttrdyvtes
                       + +k++++G + vGk++l+ r+  nk ++++     +   +++t +
     hk04051    39    AYSFKVVLLGEGCVGKTSLVLRYCENK-FNDKHIT--TLQASFLTKK 82   

                   ieedgktitgatfqWgykfnllDtpGlhrqedydalrrlyypevlsslev
                     ++gk          + + ++Dt+G   qe++ al+++yy+++++++ v
     hk04051    83 LNIGGKR---------VNLAIWDTAG---QERFHALGPIYYRDSNGAILV 120  

                   ldlvilvldvedglekdtkeiihhadkygvpillvgnkidlkdekpgyfv
                   +d++   +++++++  + ke+++ +   ++ + +vgnkidl+ e+     
     hk04051   121 YDITDE-DSFQKVK-NWVKELRKMLG-NEICLCIVGNKIDLEKER----- 162  

                   dlkphlaslfaklngephfiplsaetgkgidslfglvea<-*
                    ++ ++a+ +a++ g      +sa+  kgi++lf  + +   
     hk04051   163 HVSIQEAESYAESVGAK-HYHTSAKQNKGIEELFLDLCK    200  

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