hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-22475602/chunk_1/iprscan-20080812-22475602.nocrc
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Query sequence: hk04088
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00343.10.ls Carbohydrate phosphorylase               1896.1          0   1
PF00343.10.fs Carbohydrate phosphorylase               1894.4          0   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00343.10.fs   1/1     134   852 ..     1   746 []  1894.4        0
PF00343.10.ls   1/1     134   852 ..     1   746 []  1896.1        0

Alignments of top-scoring domains:
PF00343.10.fs: domain 1 of 1, from 134 to 852: score 1894.4, E = 0
                   *->ALkeLGlnLEELlEeEkDAGLGNGGLGRLAACFLDSlATLgLPayGY
                      A+++LGl+LEEL+E+E+DAGLGNGGLGRLAACFLDS+ATLgL+ayGY
     hk04088   134    AIYQLGLDLEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGY 180  

                   GlRYeYGlFkQkIvdGkQvElPDdWLeyGnPWEieRhdvaypVrvGFyGk
                   G+RYe+G+F+QkIv+G+QvE++DdWL+yGnPWE++R++ ++pV+  FyG+
     hk04088   181 GIRYEFGIFNQKIVNGWQVEEADDWLRYGNPWEKARPEYMLPVH--FYGR 228  

                   VeelesegkkkkfrWedtevvlAlAYDtPIPGYrTnntntLRLWsAkass
                   Ve   ++  +   +W dt+vvlA++YDtP+PGY++n++nt+RLWsAka +
     hk04088   229 VE---HTPDG--VKWLDTQVVLAMPYDTPVPGYKNNTVNTMRLWSAKA-P 272  

                   eeFNLadFNdGdYlaAvedknraEnisrVLYPnDntyeGKeLRLKQQYFl
                   ++F L dFN+GdY+ Av+d+n+aEnisrVLYPnDn++eGKeLRLKQ+YF+
     hk04088   273 NDFKLQDFNVGDYIEAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 322  

                   VsAtLqDIirRfKkshfGkgdgvtskslselpdKvAIQLNDTHPtLaIPE
                   V++tLqDIirRfK+s+fG++d+v+ + ++ +pdKvAIQLNDTHP+L+IPE
     hk04088   323 VASTLQDIIRRFKSSKFGCRDPVR-TCFETFPDKVAIQLNDTHPALSIPE 371  

                   LMRiLiDeEglsWdeAWeITtkTFaYTNHTvLPEALEkWPVsLvekLLPR
                   LMRiL+D E+ +Wd+AWeIT kT+aYTNHTvLPEALE+WPVs++ekLLPR
     hk04088   372 LMRILVDVEKVDWDKAWEITKKTCAYTNHTVLPEALERWPVSMFEKLLPR 421  

                   HlqIIyEINeRFlklVeekwPPgDedklrrlSIidEGhnatkPgegKrVr
                   Hl+IIy IN+R+l+ V++ +P gD+d+lrr+S+i+E       g+ Kr++
     hk04088   422 HLEIIYAINQRHLDHVAALFP-GDVDRLRRMSVIEE-------GDCKRIN 463  

                   MAhLaiVGSHaVNGVAklHSDLvKkdlFaDFaelwPnKFqNKTNGITPRR
                   MAhL++ GSHaVNGVA++HS++vK+++F+DF+el+P+KFqNKTNGITPRR
     hk04088   464 MAHLCVIGSHAVNGVARIHSEIVKQSVFKDFYELEPEKFQNKTNGITPRR 513  

                   WleqaNPgLaaiitksLgtdeWvtdLeqLkkLeefaDdpaFieewakiKq
                   Wl+++NPgLa  i +++g +e++tdL+qLkkL +++ d++Fi+++ak+Kq
     hk04088   514 WLLLCNPGLANTIVEKIG-EEFLTDLSQLKKLLPLVSDEVFIRDVAKVKQ 562  

                   aNKqrLAeyIekelgVevNPnaLFDVQVKRIHEYKRQLLNvLHVIyrYnr
                   +NK+++++++eke++V++NP+++FDV+VKRIHEYKRQLLN+LHV ++Ynr
     hk04088   563 ENKLKFSAFLEKEYKVKINPSSMFDVHVKRIHEYKRQLLNCLHVVTLYNR 612  

                   IKedPpeeRkkvvPRVvIfGGKAAPgYymAKrIIKLInsVAdVvNnDPeV
                   IK dP    k +vPR+v++GGKAAPgY+mAK IIKL++s++dVvN+DP V
     hk04088   613 IKRDPA---KAFVPRTVMIGGKAAPGYHMAKLIIKLVTSIGDVVNHDPVV 659  

                   gdkLKVVFipNYrVSlAEkiIPAsDiSEQISTAGtEASGTSNMKFaLNGA
                   gd+LKV+F++NYrVSlAEk+IPA+D+S+QISTAGtEASGT+NMKF+LNGA
     hk04088   660 GDRLKVIFLENYRVSLAEKVIPAADLSQQISTAGTEASGTGNMKFMLNGA 709  

                   LTIGTLDGANVEIaEeVGeeNiFIFGltaeeVealrkkGYrsreyykkDp
                   LTIGT+DGANVE+aEe+G+eN+FIFGl++e+Veal++kGY++reyy+++p
     hk04088   710 LTIGTMDGANVEMAEEAGAENLFIFGLRVEDVEALDRKGYNAREYYDHLP 759  

                   rLrqVldqIesGfFspedpdrFrdildSliGkslLqygDyYlVlaDFrsY
                   +L+q++dqI+sGfFsp++pd F+di+++      L+++D+++V+aD+++Y
     hk04088   760 ELKQAVDQISSGFFSPKEPDCFKDIVNM------LMHHDRFKVFADYEAY 803  

                   vdaQkrVDelYkdreaWtkksIlNiAnsGkFSSDRTIkEYAkeIWgIep<
                   + +Q++VD+lY+++++Wtkk+I+NiA+sGkFSSDRTI EYA+eIWg+ep 
     hk04088   804 MQCQAQVDQLYRNPKEWTKKVIRNIACSGKFSSDRTITEYAREIWGVEP  852  

                   -*
                     
     hk04088     -    -    

PF00343.10.ls: domain 1 of 1, from 134 to 852: score 1896.1, E = 0
                   *->ALkeLGlnLEELlEeEkDAGLGNGGLGRLAACFLDSlATLgLPayGY
                      A+++LGl+LEEL+E+E+DAGLGNGGLGRLAACFLDS+ATLgL+ayGY
     hk04088   134    AIYQLGLDLEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGY 180  

                   GlRYeYGlFkQkIvdGkQvElPDdWLeyGnPWEieRhdvaypVrvGFyGk
                   G+RYe+G+F+QkIv+G+QvE++DdWL+yGnPWE++R++ ++pV+  FyG+
     hk04088   181 GIRYEFGIFNQKIVNGWQVEEADDWLRYGNPWEKARPEYMLPVH--FYGR 228  

                   VeelesegkkkkfrWedtevvlAlAYDtPIPGYrTnntntLRLWsAkass
                   Ve   ++  +   +W dt+vvlA++YDtP+PGY++n++nt+RLWsAka +
     hk04088   229 VE---HTPDG--VKWLDTQVVLAMPYDTPVPGYKNNTVNTMRLWSAKA-P 272  

                   eeFNLadFNdGdYlaAvedknraEnisrVLYPnDntyeGKeLRLKQQYFl
                   ++F L dFN+GdY+ Av+d+n+aEnisrVLYPnDn++eGKeLRLKQ+YF+
     hk04088   273 NDFKLQDFNVGDYIEAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 322  

                   VsAtLqDIirRfKkshfGkgdgvtskslselpdKvAIQLNDTHPtLaIPE
                   V++tLqDIirRfK+s+fG++d+v+ + ++ +pdKvAIQLNDTHP+L+IPE
     hk04088   323 VASTLQDIIRRFKSSKFGCRDPVR-TCFETFPDKVAIQLNDTHPALSIPE 371  

                   LMRiLiDeEglsWdeAWeITtkTFaYTNHTvLPEALEkWPVsLvekLLPR
                   LMRiL+D E+ +Wd+AWeIT kT+aYTNHTvLPEALE+WPVs++ekLLPR
     hk04088   372 LMRILVDVEKVDWDKAWEITKKTCAYTNHTVLPEALERWPVSMFEKLLPR 421  

                   HlqIIyEINeRFlklVeekwPPgDedklrrlSIidEGhnatkPgegKrVr
                   Hl+IIy IN+R+l+ V++ +P gD+d+lrr+S+i+E       g+ Kr++
     hk04088   422 HLEIIYAINQRHLDHVAALFP-GDVDRLRRMSVIEE-------GDCKRIN 463  

                   MAhLaiVGSHaVNGVAklHSDLvKkdlFaDFaelwPnKFqNKTNGITPRR
                   MAhL++ GSHaVNGVA++HS++vK+++F+DF+el+P+KFqNKTNGITPRR
     hk04088   464 MAHLCVIGSHAVNGVARIHSEIVKQSVFKDFYELEPEKFQNKTNGITPRR 513  

                   WleqaNPgLaaiitksLgtdeWvtdLeqLkkLeefaDdpaFieewakiKq
                   Wl+++NPgLa  i +++g +e++tdL+qLkkL +++ d++Fi+++ak+Kq
     hk04088   514 WLLLCNPGLANTIVEKIG-EEFLTDLSQLKKLLPLVSDEVFIRDVAKVKQ 562  

                   aNKqrLAeyIekelgVevNPnaLFDVQVKRIHEYKRQLLNvLHVIyrYnr
                   +NK+++++++eke++V++NP+++FDV+VKRIHEYKRQLLN+LHV ++Ynr
     hk04088   563 ENKLKFSAFLEKEYKVKINPSSMFDVHVKRIHEYKRQLLNCLHVVTLYNR 612  

                   IKedPpeeRkkvvPRVvIfGGKAAPgYymAKrIIKLInsVAdVvNnDPeV
                   IK dP    k +vPR+v++GGKAAPgY+mAK IIKL++s++dVvN+DP V
     hk04088   613 IKRDPA---KAFVPRTVMIGGKAAPGYHMAKLIIKLVTSIGDVVNHDPVV 659  

                   gdkLKVVFipNYrVSlAEkiIPAsDiSEQISTAGtEASGTSNMKFaLNGA
                   gd+LKV+F++NYrVSlAEk+IPA+D+S+QISTAGtEASGT+NMKF+LNGA
     hk04088   660 GDRLKVIFLENYRVSLAEKVIPAADLSQQISTAGTEASGTGNMKFMLNGA 709  

                   LTIGTLDGANVEIaEeVGeeNiFIFGltaeeVealrkkGYrsreyykkDp
                   LTIGT+DGANVE+aEe+G+eN+FIFGl++e+Veal++kGY++reyy+++p
     hk04088   710 LTIGTMDGANVEMAEEAGAENLFIFGLRVEDVEALDRKGYNAREYYDHLP 759  

                   rLrqVldqIesGfFspedpdrFrdildSliGkslLqygDyYlVlaDFrsY
                   +L+q++dqI+sGfFsp++pd F+di+++      L+++D+++V+aD+++Y
     hk04088   760 ELKQAVDQISSGFFSPKEPDCFKDIVNM------LMHHDRFKVFADYEAY 803  

                   vdaQkrVDelYkdreaWtkksIlNiAnsGkFSSDRTIkEYAkeIWgIep<
                   + +Q++VD+lY+++++Wtkk+I+NiA+sGkFSSDRTI EYA+eIWg+ep 
     hk04088   804 MQCQAQVDQLYRNPKEWTKKVIRNIACSGKFSSDRTITEYAREIWGVEP  852  

                   -*
                     
     hk04088     -    -    

//