hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-22531118/chunk_1/iprscan-20080812-22531118.nocrc
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Query sequence: hk04187
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00233.9.fs 3'5'-cyclic nucleotide phosphodiesterase       545.3   4.7e-184   1
PF00233.9.ls 3'5'-cyclic nucleotide phosphodiesterase       547.2   1.6e-161   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00233.9.fs   1/1     395   639 ..     1   255 []   545.3 4.7e-184
PF00233.9.ls   1/1     395   639 ..     1   255 []   547.2 1.6e-161

Alignments of top-scoring domains:
PF00233.9.fs: domain 1 of 1, from 395 to 639: score 545.3, E = 4.7e-184
                   *->YHNwiHAfdVtQtthlLlltlaleryLtdlEvLalvfAAaiHDvDHr
                      YHN++HA+dV Q+th+Ll t+al++++tdlE+La++fAAaiHDvDH+
     hk04187   395    YHNSLHAADVAQSTHVLLSTPALDAVFTDLEILAAIFAAAIHDVDHP 441  

                   GTnNsFqinsLqkSeLAlLYndegSVLEnHHlaqafkLLqdEecnIfqNL
                   G++N+F+in+  +SeLAl+Ynde SVLEnHHla++fkLLq+E+c+If NL
     hk04187   442 GVSNQFLINT--NSELALMYNDE-SVLENHHLAVGFKLLQEEHCDIFMNL 488  

                   skkdfrtlrdlvieaILATDmslHlqklkdlktmveqkkvyetgvEWtqY
                   +kk+++tlr++vi+++LATDms+H+++l+dlktmve+kkv+++gv    +
     hk04187   489 TKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGV----L 534  

                   lldnythkilllsllmtAADLSnpTKpwklskRwAelimeEFFeQGDlEr
                   lldnyt++i++l +++++ADLSnpTK+++l+++w+ +imeEFF+QGD+Er
     hk04187   535 LLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEEFFQQGDKER 584  

                   elGldrpspmcDRtsAayvpksQvgFidfIvePvfklLadvvekDdiqpl
                   e G+  +spmcD+++ a+v+ksQvgFid+Iv+P+++++ad+v + d+q++
     hk04187   585 ERGME-ISPMCDKHT-ASVEKSQVGFIDYIVHPLWETWADLVQP-DAQDI 631  

                   ldtiedNr<-*
                   ldt+edNr   
     hk04187   632 LDTLEDNR    639  

PF00233.9.ls: domain 1 of 1, from 395 to 639: score 547.2, E = 1.6e-161
                   *->YHNwiHAfdVtQtthlLlltlaleryLtdlEvLalvfAAaiHDvDHr
                      YHN++HA+dV Q+th+Ll t+al++++tdlE+La++fAAaiHDvDH+
     hk04187   395    YHNSLHAADVAQSTHVLLSTPALDAVFTDLEILAAIFAAAIHDVDHP 441  

                   GTnNsFqinsLqkSeLAlLYndegSVLEnHHlaqafkLLqdEecnIfqNL
                   G++N+F+in+  +SeLAl+Ynde SVLEnHHla++fkLLq+E+c+If NL
     hk04187   442 GVSNQFLINT--NSELALMYNDE-SVLENHHLAVGFKLLQEEHCDIFMNL 488  

                   skkdfrtlrdlvieaILATDmslHlqklkdlktmveqkkvyetgvEWtqY
                   +kk+++tlr++vi+++LATDms+H+++l+dlktmve+kkv+++gv    +
     hk04187   489 TKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGV----L 534  

                   lldnythkilllsllmtAADLSnpTKpwklskRwAelimeEFFeQGDlEr
                   lldnyt++i++l +++++ADLSnpTK+++l+++w+ +imeEFF+QGD+Er
     hk04187   535 LLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEEFFQQGDKER 584  

                   elGldrpspmcDRtsAayvpksQvgFidfIvePvfklLadvvekDdiqpl
                   e G+  +spmcD+++ a+v+ksQvgFid+Iv+P+++++ad+v + d+q++
     hk04187   585 ERGME-ISPMCDKHT-ASVEKSQVGFIDYIVHPLWETWADLVQP-DAQDI 631  

                   ldtiedNr<-*
                   ldt+edNr   
     hk04187   632 LDTLEDNR    639  

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