hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-22584981/chunk_1/iprscan-20080812-22584981.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk04261 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08441.2.fs Integrin alpha 500.5 1.2e-151 1 PF08441.2.ls Integrin alpha 502.3 5.1e-148 1 PF01839.13.ls FG-GAP repeat 100.1 6.2e-27 3 PF01839.13.fs FG-GAP repeat 94.9 8.2e-27 4 PF00357.10.fs Integrin alpha cytoplasmic region 20.9 3.8e-06 1 PF00357.10.ls Integrin alpha cytoplasmic region 22.9 0.0011 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01839.13.fs 2/4 383 421 .. 1 36 [] 40.3 7e-11 PF01839.13.ls 1/3 383 421 .. 1 36 [] 42.3 1.5e-09 PF01839.13.ls 2/3 445 477 .. 1 36 [] 34.8 2.7e-07 PF01839.13.fs 3/4 445 477 .. 1 36 [] 33.0 1e-08 PF01839.13.ls 3/3 502 532 .. 1 36 [] 22.9 0.0011 PF01839.13.fs 4/4 502 532 .. 1 36 [] 21.1 2.9e-05 PF08441.2.fs 1/1 534 1025 .. 1 483 [] 500.5 1.2e-151 PF08441.2.ls 1/1 534 1025 .. 1 483 [] 502.3 5.1e-148 PF00357.10.fs 1/1 1124 1138 .. 1 15 [] 20.9 3.8e-06 PF00357.10.ls 1/1 1124 1138 .. 1 15 [] 22.9 0.0011 Alignments of top-scoring domains: PF01839.13.fs: domain 2 of 4, from 383 to 421: score 40.3, E = 7e-11 *->fgssvaagDlnGDGrpDlvvgaPgadggt.d..gsvyll<-* fg+s+a++Dln DG pDl+vgaP +++++++ +g+vy++ hk04261 383 FGYSLAVADLNSDGWPDLIVGAPYFFERQeElgGAVYVY 421 PF01839.13.ls: domain 1 of 3, from 383 to 421: score 42.3, E = 1.5e-09 *->fgssvaagDlnGDGrpDlvvgaPgadggt.d..gsvyll<-* fg+s+a++Dln DG pDl+vgaP +++++++ +g+vy++ hk04261 383 FGYSLAVADLNSDGWPDLIVGAPYFFERQeElgGAVYVY 421 PF01839.13.ls: domain 2 of 3, from 445 to 477: score 34.8, E = 2.7e-07 *->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-* + s +++gDln DG+pD++vgaP +++dg+v+++ hk04261 445 GISLAVLGDLNQDGFPDIAVGAP----FDgDGKVFIY 477 PF01839.13.fs: domain 3 of 4, from 445 to 477: score 33.0, E = 1e-08 *->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-* + s +++gDln DG+pD++vgaP +++dg+v+++ hk04261 445 GISLAVLGDLNQDGFPDIAVGAP----FDgDGKVFIY 477 PF01839.13.ls: domain 3 of 3, from 502 to 532: score 22.9, E = 0.0011 *->fgssvaag.DlnGDGrpDlvvgaPgadggt.dgsvyll<-* fg+s+++ D++G+ +pDl+v g+ +++++l+ hk04261 502 FGYSLSGSlDMDGNQYPDLLV-------GSlADTAVLF 532 PF01839.13.fs: domain 4 of 4, from 502 to 532: score 21.1, E = 2.9e-05 *->fgssvaag.DlnGDGrpDlvvgaPgadggt.dgsvyll<-* fg+s+++ D++G+ +pDl+v g+ +++++l+ hk04261 502 FGYSLSGSlDMDGNQYPDLLV-------GSlADTAVLF 532 PF08441.2.fs: domain 1 of 1, from 534 to 1025: score 500.5, E = 1.2e-151 *->sRPVvsvsaslsftPaeinpekknCqlpggttpvsCfnvtvCftvtg +RP+++vs ++s+ P++i++e++nC + +C++++vCf++ hk04261 534 ARPILHVSHEVSIAPRSIDLEQPNCAGG----HSVCVDLRVCFSYIA 576 ksvdqlgpqqivlnytLqLDsarkkkrlisRalFldetk....sstltrn +++++ + + l+y+L++D++r+ +++++R+ Fl + + +++ ++ +++ hk04261 577 VPSSY--SPTVALDYVLDADTDRRLRGQVPRVTFL-SRNleepKHQASGT 623 lvlgnqgseeCetfklyLrdEscvrDklsPIvirlnysL.esepkdgrpr + l++q++++C + ++L++ +v+Dkl+ Iv++l+ysL++++ +++ p+ hk04261 624 VWLKHQHDRVCGDAMFQLQE--NVKDKLRAIVVTLSYSLqTPRLRRQAPG 671 adlpgllqPvLnqysptsitfqipFeK.nCGeDniCvaDLqL.svsfslr + lp++ P+Ln+++p++++++i+F+K++CGeD+iC+++LqL +++f++r hk04261 672 QGLPPV-APILNAHQPSTQRAEIHFLKqGCGEDKICQSNLQLvRARFCTR 720 e..............gtptLvvGdtkeLtLsitvtNkP.........GEd ++++ ++ + + ++ t +++++ + L++ vtN+P+++ +++ +G+d hk04261 721 VsdtefqplpmdvdgTTALFALSGQPVIGLELMVTNLPsdpaqpqadGDD 770 AYeaqLvvtyPpgLsfskverlqnpesekplsCesnkengtrsvtCdlGn A+eaqL v +P +L++s+v++ ++ ekpl C sn ++ ++v C+lGn hk04261 771 AHEAQLLVMLPDSLHYSGVRA--LDPAEKPL-CLSN--ENASHVECELGN 815 PimkagsqvtftitFdvsslsglgdslefdlqatStNeepsenlndntvt P mk+g+qvtf++++++s++s +++le l + + + ++++++v+ hk04261 816 P-MKRGAQVTFYLILSTSGISIETTELEVELLLATIS-----EQELHPVS 859 leipVkyeadlsisGvsepsqvffngsnwegesapeseedvGpkvpeveh +++ V +e+ lsi G + p q+ff+g ++ ge a++se dvG ++v++ hk04261 860 ARARVFIELPLSIAGMAIPQQLFFSG-VVRGERAMQSERDVG---SKVKY 905 tYevrNlGpsL.tvpnaslniqwPyelasdsngkvpllYllevqt.g.sk + +v N+G+sL+t++ a lni+wP+e+ +ngk +llY+++v+ +g+++ hk04261 906 EVTVSNQGQSLrTLGSAFLNIMWPHEI---ANGK-WLLYPMQVELeGgQG 951 segnvsCspqnlninplnldlsssgttprleallrnsrerqeigesev.. + +++ Csp+++ i +l +d+ +++ ++++++++ ++erqe + s+++ hk04261 952 PGQKGLCSPRPN-ILHLDVDSRDRRRRELEPPEQQEPGERQEPSMSWWpv 1000 ....aqsykvLdCsssnasClrirC<-* ++ +++++ +LdC+ ++a C+++ C hk04261 1001 ssaeKKKNITLDCARGTANCVVFSC 1025 PF08441.2.ls: domain 1 of 1, from 534 to 1025: score 502.3, E = 5.1e-148 *->sRPVvsvsaslsftPaeinpekknCqlpggttpvsCfnvtvCftvtg +RP+++vs ++s+ P++i++e++nC + +C++++vCf++ hk04261 534 ARPILHVSHEVSIAPRSIDLEQPNCAGG----HSVCVDLRVCFSYIA 576 ksvdqlgpqqivlnytLqLDsarkkkrlisRalFldetk....sstltrn +++++ + + l+y+L++D++r+ +++++R+ Fl + + +++ ++ +++ hk04261 577 VPSSY--SPTVALDYVLDADTDRRLRGQVPRVTFL-SRNleepKHQASGT 623 lvlgnqgseeCetfklyLrdEscvrDklsPIvirlnysL.esepkdgrpr + l++q++++C + ++L++ +v+Dkl+ Iv++l+ysL++++ +++ p+ hk04261 624 VWLKHQHDRVCGDAMFQLQE--NVKDKLRAIVVTLSYSLqTPRLRRQAPG 671 adlpgllqPvLnqysptsitfqipFeK.nCGeDniCvaDLqL.svsfslr + lp++ P+Ln+++p++++++i+F+K++CGeD+iC+++LqL +++f++r hk04261 672 QGLPPV-APILNAHQPSTQRAEIHFLKqGCGEDKICQSNLQLvRARFCTR 720 e..............gtptLvvGdtkeLtLsitvtNkP.........GEd ++++ ++ + + ++ t +++++ + L++ vtN+P+++ +++ +G+d hk04261 721 VsdtefqplpmdvdgTTALFALSGQPVIGLELMVTNLPsdpaqpqadGDD 770 AYeaqLvvtyPpgLsfskverlqnpesekplsCesnkengtrsvtCdlGn A+eaqL v +P +L++s+v++ ++ ekpl C sn ++ ++v C+lGn hk04261 771 AHEAQLLVMLPDSLHYSGVRA--LDPAEKPL-CLSN--ENASHVECELGN 815 PimkagsqvtftitFdvsslsglgdslefdlqatStNeepsenlndntvt P mk+g+qvtf++++++s++s +++le l + + + ++++++v+ hk04261 816 P-MKRGAQVTFYLILSTSGISIETTELEVELLLATIS-----EQELHPVS 859 leipVkyeadlsisGvsepsqvffngsnwegesapeseedvGpkvpeveh +++ V +e+ lsi G + p q+ff+g ++ ge a++se dvG ++v++ hk04261 860 ARARVFIELPLSIAGMAIPQQLFFSG-VVRGERAMQSERDVG---SKVKY 905 tYevrNlGpsL.tvpnaslniqwPyelasdsngkvpllYllevqt.g.sk + +v N+G+sL+t++ a lni+wP+e+ +ngk +llY+++v+ +g+++ hk04261 906 EVTVSNQGQSLrTLGSAFLNIMWPHEI---ANGK-WLLYPMQVELeGgQG 951 segnvsCspqnlninplnldlsssgttprleallrnsrerqeigesev.. + +++ Csp+++ i +l +d+ +++ ++++++++ ++erqe + s+++ hk04261 952 PGQKGLCSPRPN-ILHLDVDSRDRRRRELEPPEQQEPGERQEPSMSWWpv 1000 ....aqsykvLdCsssnasClrirC<-* ++ +++++ +LdC+ ++a C+++ C hk04261 1001 ssaeKKKNITLDCARGTANCVVFSC 1025 PF00357.10.fs: domain 1 of 1, from 1124 to 1138: score 20.9, E = 3.8e-06 *->KcGFFKRkykpqeee<-* K+GFFKR+++p+++ hk04261 1124 KMGFFKRAKHPEATV 1138 PF00357.10.ls: domain 1 of 1, from 1124 to 1138: score 22.9, E = 0.0011 *->KcGFFKRkykpqeee<-* K+GFFKR+++p+++ hk04261 1124 KMGFFKRAKHPEATV 1138 //