hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-22584981/chunk_1/iprscan-20080812-22584981.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hk04261
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
SM00191                                                 209.4    3.2e-58   5

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
SM00191         1/5     111   173 ..     1    56 []    35.2  9.2e-06
SM00191         2/5     322   375 ..     1    56 []    23.8    0.024
SM00191         3/5     379   435 ..     1    56 []    63.3    3e-14
SM00191         4/5     440   493 ..     1    56 []    75.8  5.3e-18
SM00191         5/5     498   554 ..     1    56 []    11.3       13

Alignments of top-scoring domains:
SM00191: domain 1 of 5, from 111 to 173: score 35.2, E = 9.2e-06
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr............GaV
                      pgs+FG+sva ++ l       +++llvGAP+    ++++ +++G  
     hk04261   111    PGSLFGFSVALHRQLQPR---PQSWLLVGAPQalalpgqqanrtGGL 154  

                   Yvyfgssnsgggrciplqnls<-*
                   ++++ s     ++c +++++    
     hk04261   155 FACPLSLE--ETDCYRVDIDQ    173  

SM00191: domain 2 of 5, from 322 to 375: score 23.8, E = 0.024
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr....GaVYvyfgssn
                       +sy+G+s++++  l      + + +++GAPr +++GaV++++ +s 
     hk04261   322    LNSYLGFSIDSGKGLVRA--EELS-FVAGAPRanhkGAVVILRKDS- 364  

                   sgggrciplqnls<-*
                      +r+ p   ls   
     hk04261   365 --ASRLVPEVMLS    375  

SM00191: domain 3 of 5, from 379 to 435: score 63.3, E = 3e-14
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr.........GaVYvy
                        s FGys+a v+Dln D  G+pD l+vGAP+  +++++ +GaVYvy
     hk04261   379    LTSGFGYSLA-VADLNSD--GWPD-LIVGAPYfferqeelgGAVYVY 421  

                   fgssnsgggrciplqnls<-*
                    ++    gg++ +++ l+   
     hk04261   422 LNQ----GGHWAGISPLR    435  

SM00191: domain 4 of 5, from 440 to 493: score 75.8, E = 5.3e-18
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr...GaVYvyfgssns
                      p+s+FG s+a +gDln+D  G+pD ++vGAP++++G+V++y+gss  
     hk04261   440    PDSMFGISLAVLGDLNQD--GFPD-IAVGAPFdgdGKVFIYHGSSL- 482  

                   gggrciplqnls<-*
                    g   +p+q+l+   
     hk04261   483 -GVVAKPSQVLE    493  

SM00191: domain 5 of 5, from 498 to 554: score 11.3, E = 13
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr......GaVYvyfgs
                          FGys+ g  D +g+   ypD llvG+  ++    +a +++++s
     hk04261   498    GIKSFGYSLSGSLDMDGN--QYPD-LLVGSLAdtavlfRARPILHVS 541  

                   snsgggrciplqnls<-*
                        +   ++  l+   
     hk04261   542 HE--VSIAPRSIDLE    554  

//