hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-23041915/chunk_1/iprscan-20080812-23041915.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk04457 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04130.4.ls Spc97 / Spc98 family 797.9 5.4e-237 1 PF04130.4.fs Spc97 / Spc98 family 796.3 1.7e-236 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04130.4.fs 1/1 300 785 .. 1 784 [] 796.3 1.7e-236 PF04130.4.ls 1/1 300 785 .. 1 784 [] 797.9 5.4e-237 Alignments of top-scoring domains: PF04130.4.fs: domain 1 of 1, from 300 to 785: score 796.3, E = 1.7e-236 *->LlrdlLYaLlGidGkyikfnneidYmDrNrnkneasateafklrvqi L+rd+LY+++GidGk+ik+nn ++++++v+ hk04457 300 LVRDILYVFQGIDGKNIKMNN-----------------TENCYKVEG 329 skflprslrsllrrllelGlyYqsLieiareilsvekFiekssgfneirk + +l rslr+++ rl+elG++++ +++++++++s++ hk04457 330 KANLSRSLRDTAVRLSELGWLHN----------KIRRYTDQRSLD----- 364 rsasqlenkesvGlvgqAlcaaLseeLqdYyaliaqlEqqlrddlslsLf +s+Glvgq++caaL++eL++Yy+l+++l++ql+ hk04457 365 ---------RSFGLVGQSFCAALHQELREYYRLLSVLHSQLQ-------- 397 dlallslktdassskkslslrrLlrwlqpplsrlreLavskelilsvvlq l+++++++++ ++sl+lrrLl+w+++p++rl++La ++v hk04457 398 ---LEDDQGVNLGLESSLTLRRLLVWTYDPKIRLKTLA-------ALV-- 435 iGkllnkiiNkasdklkvlkGgelLsllqFykfakekhGDpevrkllekL d+++ +kGgel+s++ + ++ k+GDp++r+l++++ hk04457 436 -------------DHCQGRKGGELASAV--HAYT--KTGDPYMRSLVQHI 468 LteisgPyykmlenWiykGeLeDtygEFFIkeneditsmslQvenskkyl L +s+P++++l++Wiy+GeLeDty+EFF+++++++ hk04457 469 LSLVSHPVLSFLYRWIYDGELEDTYHEFFVASDPTV-------------- 504 eeleklillkpedksdryWhkkYkLrpdmiPsFlpmdlAnkILltGKslN k+dr+Wh+kY+Lr+ miPsF++md+++k+Ll+GKs+N hk04457 505 -------------KTDRLWHDKYTLRKSMIPSFMTMDQSRKVLLIGKSIN 541 fLrecckelnikwsqepneiisNevkdINvnidknsdtnqssdssilisd fL+++c+++ ++++++++ hk04457 542 FLHQVCHDQ--TPTTKMIA------------------------------- 558 dvidkrirlerlNldqyissdHIkvgefasDlekSerrtsvgmnksiiNi hk04457 - -------------------------------------------------- - KvkeNvsdleKrflkkyrdeyelesyeadksaeelkrlkllsyftdtsfe ++ksae+++++++l+++ +++f+ hk04457 559 ---------------------------VTKSAESPQDAADLFTDLENAFQ 581 elIdeayeeaakhLldllveeydLlgHlkalKrYLLLgqGDFiqafmdka Id+ay+e++k+Lld+l+++y+Ll+H++a++rYLLLgqGDFi+++md++ hk04457 582 GKIDAAYFETSKYLLDVLNKKYSLLDHMQAMRRYLLLGQGDFIRHLMDLL 631 keeLGekkPhykknaiadllsNFFphkLtslLqlAlrksnafdknnlrle k+eL +P a++l+ +h+Lt++L++A+r++na + hk04457 632 KPEL--VRP-------ATTLY---QHNLTGILETAVRATNA--Q------ 661 sitievdplkskdvedllnriktneenntnnmNevnNenkavdavsdevl +d+ +e+l hk04457 662 -----FDS--------------------------------------PEIL 668 knldankkldsrvlepvpgdlnvtGWevfsLeYkvdwPLslvftpevFls ++ld+ r+le +pgd tGW+vfsL+Y+vd+P+++vft+e+ +s hk04457 669 RRLDV------RLLEVSPGD---TGWDVFSLDYHVDGPIATVFTREC-MS 708 kYlriFrfLwrlKrvehqLemkiWkehmfnkgsnnasrklsspikreiaq +Ylr+F+fLwr Kr+e++L+ +i+k hm+n++ +++ +e++ hk04457 709 HYLRVFNFLWRAKRMEYILT-DIRKGHMCNAKLLRNM--------PEFSG 749 alrrssllReeMlhFvknlqyYilfeVIEsnWqeHlq<-* l+++++l +eM+hF++++qyYi+feV+E++W+e l+ hk04457 750 VLHQCHILASEMVHFIHQMQYYITFEVLECSWDE-LW 785 PF04130.4.ls: domain 1 of 1, from 300 to 785: score 797.9, E = 5.4e-237 *->LlrdlLYaLlGidGkyikfnneidYmDrNrnkneasateafklrvqi L+rd+LY+++GidGk+ik+nn ++++++v+ hk04457 300 LVRDILYVFQGIDGKNIKMNN-----------------TENCYKVEG 329 skflprslrsllrrllelGlyYqsLieiareilsvekFiekssgfneirk + +l rslr+++ rl+elG++++ +++++++++s++ hk04457 330 KANLSRSLRDTAVRLSELGWLHN----------KIRRYTDQRSLD----- 364 rsasqlenkesvGlvgqAlcaaLseeLqdYyaliaqlEqqlrddlslsLf +s+Glvgq++caaL++eL++Yy+l+++l++ql+ hk04457 365 ---------RSFGLVGQSFCAALHQELREYYRLLSVLHSQLQ-------- 397 dlallslktdassskkslslrrLlrwlqpplsrlreLavskelilsvvlq l+++++++++ ++sl+lrrLl+w+++p++rl++La ++v hk04457 398 ---LEDDQGVNLGLESSLTLRRLLVWTYDPKIRLKTLA-------ALV-- 435 iGkllnkiiNkasdklkvlkGgelLsllqFykfakekhGDpevrkllekL d+++ +kGgel+s++ + ++ k+GDp++r+l++++ hk04457 436 -------------DHCQGRKGGELASAV--HAYT--KTGDPYMRSLVQHI 468 LteisgPyykmlenWiykGeLeDtygEFFIkeneditsmslQvenskkyl L +s+P++++l++Wiy+GeLeDty+EFF+++++++ hk04457 469 LSLVSHPVLSFLYRWIYDGELEDTYHEFFVASDPTV-------------- 504 eeleklillkpedksdryWhkkYkLrpdmiPsFlpmdlAnkILltGKslN k+dr+Wh+kY+Lr+ miPsF++md+++k+Ll+GKs+N hk04457 505 -------------KTDRLWHDKYTLRKSMIPSFMTMDQSRKVLLIGKSIN 541 fLrecckelnikwsqepneiisNevkdINvnidknsdtnqssdssilisd fL+++c+++ ++++++++ hk04457 542 FLHQVCHDQ--TPTTKMIA------------------------------- 558 dvidkrirlerlNldqyissdHIkvgefasDlekSerrtsvgmnksiiNi hk04457 - -------------------------------------------------- - KvkeNvsdleKrflkkyrdeyelesyeadksaeelkrlkllsyftdtsfe ++ksae+++++++l+++ +++f+ hk04457 559 ---------------------------VTKSAESPQDAADLFTDLENAFQ 581 elIdeayeeaakhLldllveeydLlgHlkalKrYLLLgqGDFiqafmdka Id+ay+e++k+Lld+l+++y+Ll+H++a++rYLLLgqGDFi+++md++ hk04457 582 GKIDAAYFETSKYLLDVLNKKYSLLDHMQAMRRYLLLGQGDFIRHLMDLL 631 keeLGekkPhykknaiadllsNFFphkLtslLqlAlrksnafdknnlrle k+eL +P a++l+ +h+Lt++L++A+r++na + hk04457 632 KPEL--VRP-------ATTLY---QHNLTGILETAVRATNA--Q------ 661 sitievdplkskdvedllnriktneenntnnmNevnNenkavdavsdevl +d+ +e+l hk04457 662 -----FDS--------------------------------------PEIL 668 knldankkldsrvlepvpgdlnvtGWevfsLeYkvdwPLslvftpevFls ++ld+ r+le +pgd tGW+vfsL+Y+vd+P+++vft+e+ +s hk04457 669 RRLDV------RLLEVSPGD---TGWDVFSLDYHVDGPIATVFTREC-MS 708 kYlriFrfLwrlKrvehqLemkiWkehmfnkgsnnasrklsspikreiaq +Ylr+F+fLwr Kr+e++L+ +i+k hm+n++ +++ +e++ hk04457 709 HYLRVFNFLWRAKRMEYILT-DIRKGHMCNAKLLRNM--------PEFSG 749 alrrssllReeMlhFvknlqyYilfeVIEsnWqeHlq<-* l+++++l +eM+hF++++qyYi+feV+E++W+e l+ hk04457 750 VLHQCHILASEMVHFIHQMQYYITFEVLECSWDE-LW 785 //