hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-16312517/chunk_1/iprscan-20090618-16312517.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk04481 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04704.3.fs Zfx / Zfy transcription activation region 656.0 2.8e-194 2 PF04704.3.ls Zfx / Zfy transcription activation region 649.3 2.9e-192 1 PF00096.16.ls Zinc finger, C2H2 type 290.5 3.1e-84 12 PF00096.16.fs Zinc finger, C2H2 type 266.8 3.9e-77 12 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04704.3.ls 1/1 68 372 .. 1 361 [] 649.3 2.9e-192 PF04704.3.fs 1/2 69 309 .. 1 261 [. 550.1 1.7e-162 PF04704.3.fs 2/2 326 372 .. 315 361 .] 105.9 2e-31 PF00096.16.fs 1/12 387 409 .. 1 24 [] 27.1 1.7e-05 PF00096.16.ls 1/12 387 409 .. 1 24 [] 29.1 1.5e-05 PF00096.16.ls 2/12 418 440 .. 1 24 [] 20.6 0.0052 PF00096.16.ls 3/12 480 503 .. 1 24 [] 21.3 0.0033 PF00096.16.fs 4/12 509 531 .. 1 24 [] 34.8 2e-07 PF00096.16.ls 4/12 509 531 .. 1 24 [] 36.8 6.9e-08 PF00096.16.ls 5/12 537 560 .. 1 24 [] 21.6 0.0026 PF00096.16.ls 6/12 566 591 .. 1 24 [] 20.8 0.0044 PF00096.16.ls 7/12 594 617 .. 1 24 [] 24.8 0.00029 PF00096.16.fs 7/12 594 617 .. 1 24 [] 22.8 0.0002 PF00096.16.fs 8/12 623 645 .. 1 24 [] 25.5 4.2e-05 PF00096.16.ls 8/12 623 645 .. 1 24 [] 27.5 4.5e-05 PF00096.16.fs 10/12 680 702 .. 1 24 [] 26.1 2.9e-05 PF00096.16.ls 10/12 680 702 .. 1 24 [] 28.1 2.9e-05 PF00096.16.fs 11/12 708 731 .. 1 24 [] 23.6 0.00013 PF00096.16.ls 11/12 708 731 .. 1 24 [] 25.5 0.00017 PF00096.16.ls 12/12 737 759 .. 1 24 [] 23.9 0.00054 Alignments of top-scoring domains: PF04704.3.ls: domain 1 of 1, from 68 to 372: score 649.3, E = 2.9e-192 *->EdvviEdVhCpDIleEtDvVSEgVIIPEqVLeadVGtaiEEdleEEd +++E+Vh+pDI++EtDvV+EgVI+PE+VLeadV aiEEdleE+d hk04481 68 HGLAAEVVHGPDIITETDVVTEGVIVPEAVLEADV--AIEEDLEEDD 112 SLaqclvPDdiLtSeltsesltvPEhvlvsesvHvsdvGHvEhVvhDsVv + D+iLtSel++e+++vPE+v+v+++v ++++GH+EhVv+D+V+ hk04481 113 G-------DHILTSELITETVRVPEQVFVADLV-TGPNGHLEHVVQDCVS 154 geEivddPltaDmvSeEVLVADCvSEAVIdAnGGvPGstvtIpveqqDdD g vd+P+ mvSeEVLV+++++E+VI+A+GGvPGstvtI++e++DdD hk04481 155 G---VDSPT---MVSEEVLVTNSDTETVIQAAGGVPGSTVTIKTEDDDDD 198 kvnstCEDYLMISLDDaGeKiehdGsseltmgseseqDssKlDGacpEVI +v+st+EDYLMISLDD+GeK+eh+G+++l++gs+++q+++K+DG+++EVI hk04481 199 DVKSTSEDYLMISLDDVGEKLEHMGNTPLKIGSDGSQEDAKEDGFGSEVI 248 KVYIFKADpeeDvDlGGTvdivESEsenghgvagvLDqsnsiRvpRekMV KVYIFKA++e+Dv++GGT++++ESE+++gh+vagvLDqs R++RekMV hk04481 249 KVYIFKAEAEDDVEIGGTEIVTESEYTSGHSVAGVLDQS---RMQREKMV 295 YMtVnDSqqEedDlsvAEIADEVYMEVIVGEEDAtslaadlPeheqQled YM+V+DS+qEedD+ +E +s + ed hk04481 296 YMAVKDSSQEEDDI---------------RDERRVS---------RRYED 321 sEinKTafmPvaWAAAYGNnlDsgiEsRngTASalLhiDESiGldrvlKQ GN+lDs++EsR++TA+++L+i+++i++++vlKQ hk04481 322 CQA--S-----------GNTLDSALESRSSTAAQYLQICDGINTNKVLKQ 358 KaKKrRRgEsRQYq<-* KaKKrRRgE+RQ+q hk04481 359 KAKKRRRGETRQWQ 372 PF04704.3.fs: domain 1 of 2, from 69 to 309: score 550.1, E = 1.7e-162 *->EdvviEdVhCpDIleEtDvVSEgVIIPEqVLeadVGtaiEEdleEEd +++E+Vh+pDI++EtDvV+EgVI+PE+VLeadV aiEEdleE+d hk04481 69 -GLAAEVVHGPDIITETDVVTEGVIVPEAVLEADV--AIEEDLEEDD 112 SLaqclvPDdiLtSeltsesltvPEhvlvsesvHvsdvGHvEhVvhDsVv + D+iLtSel++e+++vPE+v+v+++v ++++GH+EhVv+D+V+ hk04481 113 G-------DHILTSELITETVRVPEQVFVADLV-TGPNGHLEHVVQDCVS 154 geEivddPltaDmvSeEVLVADCvSEAVIdAnGGvPGstvtIpveqqDdD g vd+P+ mvSeEVLV+++++E+VI+A+GGvPGstvtI++e++DdD hk04481 155 G---VDSPT---MVSEEVLVTNSDTETVIQAAGGVPGSTVTIKTEDDDDD 198 kvnstCEDYLMISLDDaGeKiehdGsseltmgseseqDssKlDGacpEVI +v+st+EDYLMISLDD+GeK+eh+G+++l++gs+++q+++K+DG+++EVI hk04481 199 DVKSTSEDYLMISLDDVGEKLEHMGNTPLKIGSDGSQEDAKEDGFGSEVI 248 KVYIFKADpeeDvDlGGTvdivESEsenghgvagvLDqsnsiRvpRekMV KVYIFKA++e+Dv++GGT++++ESE+++gh+vagvLDqs R++RekMV hk04481 249 KVYIFKAEAEDDVEIGGTEIVTESEYTSGHSVAGVLDQS---RMQREKMV 295 YMtVnDSqqEedDl<-* YM+V+DS+qEedD+ hk04481 296 YMAVKDSSQEEDDI 309 PF04704.3.fs: domain 2 of 2, from 326 to 372: score 105.9, E = 2e-31 *->GNnlDsgiEsRngTASalLhiDESiGldrvlKQKaKKrRRgEsRQYq GN+lDs++EsR++TA+++L+i+++i++++vlKQKaKKrRRgE+RQ+q hk04481 326 GNTLDSALESRSSTAAQYLQICDGINTNKVLKQKAKKRRRGETRQWQ 372 <-* hk04481 - - PF00096.16.fs: domain 1 of 12, from 387 to 409: score 27.1, E = 1.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C k+F++++ LkrH++ H hk04481 387 YPCH-ICTKKFKSRGFLKRHMKNH 409 PF00096.16.ls: domain 1 of 12, from 387 to 409: score 29.1, E = 1.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C k+F++++ LkrH++ H hk04481 387 YPCH-ICTKKFKSRGFLKRHMKNH 409 PF00096.16.ls: domain 2 of 12, from 418 to 440: score 20.6, E = 0.0052 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dC+ + + k ++++Hl +H hk04481 418 YQCT-DCDFTTNKKVSFHNHLESH 440 PF00096.16.ls: domain 3 of 12, from 480 to 503: score 21.3, E = 0.0033 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +kC+ +C++ ++ L+rHl H hk04481 480 HKCK-YCDYETAEQGLLNRHLLAvH 503 PF00096.16.fs: domain 4 of 12, from 509 to 531: score 34.8, E = 2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cgk F+++s+Lk+H+rtH hk04481 509 HVCV-ECGKGFRHPSELKKHMRTH 531 PF00096.16.ls: domain 4 of 12, from 509 to 531: score 36.8, E = 6.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cgk F+++s+Lk+H+rtH hk04481 509 HVCV-ECGKGFRHPSELKKHMRTH 531 PF00096.16.ls: domain 5 of 12, from 537 to 560: score 21.6, E = 0.0026 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ +C ++ ++snLk+H++++H hk04481 537 YQCQ-YCIFRCADQSNLKTHIKSkH 560 PF00096.16.ls: domain 6 of 12, from 566 to 591: score 20.8, E = 0.0044 *->ykCpfdCgksFsrksnLkrHlrt...H<-* ykC+ +C ++F + +L+rHl ++H hk04481 566 YKCE-HCPQAFGDERELQRHLDLfqgH 591 PF00096.16.ls: domain 7 of 12, from 594 to 617: score 24.8, E = 0.00029 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++Cp +C+ + +++s+LkrH+ + H hk04481 594 HQCP-HCDHKSTNSSDLKRHIISvH 617 PF00096.16.fs: domain 7 of 12, from 594 to 617: score 22.8, E = 0.0002 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++Cp +C+ + +++s+LkrH+ + H hk04481 594 HQCP-HCDHKSTNSSDLKRHIISvH 617 PF00096.16.fs: domain 8 of 12, from 623 to 645: score 25.5, E = 4.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C+k F r+s+Lk+H +H hk04481 623 HKCE-VCDKGFHRPSELKKHSDIH 645 PF00096.16.ls: domain 8 of 12, from 623 to 645: score 27.5, E = 4.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C+k F r+s+Lk+H +H hk04481 623 HKCE-VCDKGFHRPSELKKHSDIH 645 PF00096.16.fs: domain 10 of 12, from 680 to 702: score 26.1, E = 2.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* kC+ C++ F+++ +Lk+H++tH hk04481 680 LKCK-RCKRGFRQQNELKKHMKTH 702 PF00096.16.ls: domain 10 of 12, from 680 to 702: score 28.1, E = 2.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* kC+ C++ F+++ +Lk+H++tH hk04481 680 LKCK-RCKRGFRQQNELKKHMKTH 702 PF00096.16.fs: domain 11 of 12, from 708 to 731: score 23.6, E = 0.00013 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ +C +s ++ s +krH + H hk04481 708 YQCE-YCEYSTTDASGFKRHVISiH 731 PF00096.16.ls: domain 11 of 12, from 708 to 731: score 25.5, E = 0.00017 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ +C +s ++ s +krH + H hk04481 708 YQCE-YCEYSTTDASGFKRHVISiH 731 PF00096.16.ls: domain 12 of 12, from 737 to 759: score 23.9, E = 0.00054 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C+k F+r+s+ ++H+++H hk04481 737 HRCE-FCKKGFRRPSEKNQHIMRH 759 //