hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-16312517/chunk_1/iprscan-20090618-16312517.nocrc
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Query sequence: hk04481
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 299.4    2.6e-85  12

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/12    387   409 ..     1    23 []    30.0  0.00032
SM00355      2/12    418   440 ..     1    23 []    22.6    0.054
SM00355      3/12    480   503 ..     1    23 []    24.7    0.013
SM00355      4/12    509   531 ..     1    23 []    29.7  0.00041
SM00355      5/12    537   560 ..     1    23 []    25.3   0.0084
SM00355      6/12    566   591 ..     1    23 []    19.7     0.41
SM00355      7/12    594   617 ..     1    23 []    25.1   0.0099
SM00355      8/12    623   645 ..     1    23 []    25.9   0.0058
SM00355      9/12    651   674 ..     1    23 []    18.6     0.87
SM00355     10/12    680   702 ..     1    23 []    27.0   0.0026
SM00355     11/12    708   731 ..     1    23 []    27.8   0.0015
SM00355     12/12    737   759 ..     1    23 []    23.0    0.042

Alignments of top-scoring domains:
SM00355: domain 1 of 12, from 387 to 409: score 30.0, E = 0.00032
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C+i C k+f+s++ LkrHm+ H   
     hk04481   387    YPCHI-CTKKFKSRgFLKRHMKNH    409  

SM00355: domain 2 of 12, from 418 to 440: score 22.6, E = 0.054
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  C+++++ k ++ +H+ +H   
     hk04481   418    YQCTD-CDFTTNKKvSFHNHLESH    440  

SM00355: domain 3 of 12, from 480 to 503: score 24.7, E = 0.013
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kC++ C++ +  ++ L+rH+  vH   
     hk04481   480    HKCKY-CDYETAEQgLLNRHLLaVH    503  

SM00355: domain 4 of 12, from 509 to 531: score 29.7, E = 0.00041
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + Cgk f+++++Lk+Hmr+H   
     hk04481   509    HVCVE-CGKGFRHPsELKKHMRTH    531  

SM00355: domain 5 of 12, from 537 to 560: score 25.3, E = 0.0084
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C++ C +++ ++++Lk H++++H   
     hk04481   537    YQCQY-CIFRCADQsNLKTHIKsKH    560  

SM00355: domain 6 of 12, from 566 to 591: score 19.7, E = 0.41
                   *->ykCpigCgksfssk.aLkrHmr...vH<-*
                      ykC++ C++ f ++++L+rH+   + H   
     hk04481   566    YKCEH-CPQAFGDErELQRHLDlfqGH    591  

SM00355: domain 7 of 12, from 594 to 617: score 25.1, E = 0.0099
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++Cp+ C+ + ++ ++LkrH+ +vH   
     hk04481   594    HQCPH-CDHKSTNSsDLKRHIIsVH    617  

SM00355: domain 8 of 12, from 623 to 645: score 25.9, E = 0.0058
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C+k f+++++Lk+H  +H   
     hk04481   623    HKCEV-CDKGFHRPsELKKHSDIH    645  

SM00355: domain 9 of 12, from 651 to 674: score 18.6, E = 0.87
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C + C++++s++  L  H+ +vH   
     hk04481   651    HQCRH-CDFKTSDPfILSGHILsVH    674  

SM00355: domain 10 of 12, from 680 to 702: score 27.0, E = 0.0026
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC+  C++ f+++++Lk+Hm++H   
     hk04481   680    LKCKR-CKRGFRQQnELKKHMKTH    702  

SM00355: domain 11 of 12, from 708 to 731: score 27.8, E = 0.0015
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C++ C +s+++++ +krH+ ++H   
     hk04481   708    YQCEY-CEYSTTDAsGFKRHVIsIH    731  

SM00355: domain 12 of 12, from 737 to 759: score 23.0, E = 0.042
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C+k f+++++ ++H+++H   
     hk04481   737    HRCEF-CKKGFRRPsEKNQHIMRH    759  

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