hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-23100861/chunk_1/iprscan-20080812-23100861.nocrc
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Query sequence: hk04515
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00439.15.ls Bromodomain                                 127.0      5e-35   1
PF00439.15.fs Bromodomain                                 125.0    1.1e-34   1
PF00628.19.fs PHD-finger                                   43.3    1.7e-13   2
PF00628.19.ls PHD-finger                                   40.8    4.4e-09   1
PF00855.8.fs PWWP domain                                  16.5    0.00022   2
PF00855.8.ls PWWP domain                                  10.4     0.0011   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00628.19.ls   1/1     285   333 ..     1    51 []    40.8  4.4e-09
PF00628.19.fs   1/2     285   333 ..     1    51 []    38.8  4.7e-12
PF00439.15.fs   1/1     643   730 ..     1    92 []   125.0  1.1e-34
PF00439.15.ls   1/1     643   730 ..     1    92 []   127.0    5e-35
PF02178.9.ls   1/2     915   927 ..     1    13 []     4.9      3.1
PF00855.8.ls   1/1    1092  1192 ..     1    86 []    10.4   0.0011

Alignments of top-scoring domains:
PF00628.19.ls: domain 1 of 1, from 285 to 333: score 40.8, E = 4.4e-09
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipeWyCpe
                       C++C++++  + + +l+CD C+ ++H++C+g p  pe++  W+C++
     hk04515   285    VCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQ--WLCRR 329  

                   Ckpk<-*
                   C  +   
     hk04515   330 CLQS    333  

PF00628.19.fs: domain 1 of 2, from 285 to 333: score 38.8, E = 4.7e-12
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipeWyCpe
                       C++C++++  + + +l+CD C+ ++H++C+g p  pe++  W+C++
     hk04515   285    VCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQ--WLCRR 329  

                   Ckpk<-*
                   C  +   
     hk04515   330 CLQS    333  

PF00439.15.fs: domain 1 of 1, from 643 to 730: score 125.0, E = 1.1e-34
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      +  ll+k+le+l+e++   + f +pV  s  e+PDY ++IkkPMD+ 
     hk04515   643    FLILLRKTLEQLQEKD-TGNIFSEPVPLS--EVPDYLDHIKKPMDFF 686  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   T+k++l+ ++Y  ++++F++DfnL++sN+++YN +d+++y++A++   
     hk04515   687 TMKQNLEAYRY-LNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVR    730  

PF00439.15.ls: domain 1 of 1, from 643 to 730: score 127.0, E = 5e-35
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      +  ll+k+le+l+e++   + f +pV  s  e+PDY ++IkkPMD+ 
     hk04515   643    FLILLRKTLEQLQEKD-TGNIFSEPVPLS--EVPDYLDHIKKPMDFF 686  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   T+k++l+ ++Y  ++++F++DfnL++sN+++YN +d+++y++A++   
     hk04515   687 TMKQNLEAYRY-LNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVR    730  

PF02178.9.ls: domain 1 of 2, from 915 to 927: score 4.9, E = 3.1
                   *->kRkRGRPrKaata<-*
                      +++ GRP+K++++   
     hk04515   915    PKRPGRPPKNRES    927  

PF00855.8.ls: domain 1 of 1, from 1092 to 1192: score 10.4, E = 0.0011
                   *->dfkpGDLVwAKmkGFpwWPArvvsqke...........tptsvrkkL
                       +   DLVwAK +G+p  PA+++++k+++++  +++ ++p+ + + L
     hk04515  1092    PLDALDLVWAKCRGYPSYPALIIDPKMpregmfhhgvpIPVPPLEVL 1138 

                   K...RntnsrksnrvkVqFFgdhkyrawvskkrlkPl.Ldsdiekfhkde
                   K ++  t  + +  + V+FF+   +  w+++ +l+Pl++ +d +k++  e
     hk04515  1139 KlgeQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLgVNQDLDKEKMLE 1188 

                   krKg<-*
                    rK+   
     hk04515  1189 GRKS    1192 

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