hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-23100861/chunk_1/iprscan-20080812-23100861.nocrc
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Query sequence: hk04515
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00293                                                 155.1    7.2e-42   1
SM00297                                                 139.9    2.7e-37   1
SM00249                                                  88.7    7.1e-22   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00249    1/2     285   331 ..     1    39 []    47.9  1.3e-09
SM00249    2/2     395   458 ..     1    39 []    40.8  1.9e-07
SM00297    1/1     636   744 ..     1   118 []   139.9  2.7e-37
SM00293    1/1    1093  1176 ..     1    84 []   155.1  7.2e-42

Alignments of top-scoring domains:
SM00249: domain 1 of 2, from 285 to 331: score 47.9, E = 1.3e-09
                   *->yC.vCgk......g.llqCdkgCdrwyHv.Clgppleepdg.wyCpr
                      +C +C++++  +++ +l+Cd +C+ ++H++C+g p   p+g+w+C r
     hk04515   285    VCcICNDgecqnsNvILFCD-MCNLAVHQeCYGVPYI-PEGqWLCRR 329  

                   Ck<-*
                   C+   
     hk04515   330 CL    331  

SM00249: domain 2 of 2, from 395 to 458: score 40.8, E = 1.9e-07
                   *->yC.vCgk...g.llqCd.kgCdrwyHv.Clgpple............
                      +C +C+++++g ++qC++++C +++Hv+C++ +++  + ++ ++++ 
     hk04515   395    TCyICKQrgsGaCIQCHkANCYTAFHVtCAQQAGLymkmepvretga 441  

                   .....epdg.wyCprCk<-*
                   ++++  ++++ yC+ ++   
     hk04515   442 ngtsfSVRKtAYCDIHT    458  

SM00297: domain 1 of 1, from 636 to 744: score 139.9, E = 2.7e-37
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      ++ +++++  ll++ le+l+++        + + +F epv+ +e  v
     hk04515   636    MEMqLTPFLILLRKTLEQLQEK--------DTGNIFSEPVPLSE--V 672  

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                   PDY d+IkkPMD+ t+k++le  +Y ++++F++DfnL++sN+ +YN +d+
     hk04515   673 PDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDT 722  

                   evykdAkkLeklfeeklkelpp<-*
                   ++y++A++L++   + l+++++   
     hk04515   723 IFYRAAVRLREQGGAVLRQARR    744  

SM00293: domain 1 of 1, from 1093 to 1176: score 155.1, E = 7.2e-42
                   *->fkpGDlVwAKmkGFPwWPAlvvspketpsnirktgvviphpplevlk
                      ++ +DlVwAK++G+P++PAl+++pk++++ ++++gv+ip+pplevlk
     hk04515  1093    LDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLK 1139 

                   leeeaknkrkenlypVlFFgdkdtrawvsssklfPLt<-*
                   l+e+++++++e+ly VlFF++k+t++w++++kl+PL+   
     hk04515  1140 LGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLG    1176 

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