hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-23153037/chunk_1/iprscan-20080812-23153037.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hk04568
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00638.9.ls RanBP1 domain                                  568.7   5.3e-168   2
PF00638.9.fs RanBP1 domain                                  564.9   7.4e-167   2
PF01465.10.fs GRIP domain                                     71.0    3.7e-20   1
PF01465.10.ls GRIP domain                                     73.0    9.1e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00638.9.ls   1/2      40   161 ..     1   127 []   284.9  1.4e-82
PF00638.9.fs   1/2      40   161 ..     1   127 []   283.0  5.3e-82
PF00638.9.fs   2/2     337   458 ..     1   127 []   281.9  1.2e-81
PF00638.9.ls   2/2     337   458 ..     1   127 []   283.8  3.1e-82
PF01465.10.fs   1/1     697   742 ..     1    46 []    71.0  3.7e-20
PF01465.10.ls   1/1     697   742 ..     1    46 []    73.0  9.1e-19

Alignments of top-scoring domains:
PF00638.9.ls: domain 1 of 2, from 40 to 161: score 284.9, E = 1.4e-82
                   *->EVktGEEDEevLFsqRAKLfRFdaevdlkeWKERGvGdiKILKnkdd
                      E++tGEE E+vL+sq +KLfRFdaev   +WKERG+G++KILKn+++
     hk04568    40    ELVTGEEGEKVLYSQGVKLFRFDAEV--RQWKERGLGNLKILKNEVN 84   

                   vgkvRiLMRRDqvLKVcANhyItptmtLQkPlaGSdrswvwtataDfaDg
                    gk+R+LMRR+qvLKVcANh+It+tm+L kPl+GSdr+w+w a +Df+Dg
     hk04568    85 -GKLRMLMRREQVLKVCANHWITTTMNL-KPLSGSDRAWMWSA-SDFSDG 131  

                   eaKpeqlAirFKtkEeAdeFKkkFEeaqke<-*
                   +aK+e lA++FKt+E A+eFK+kFEe+q+    
     hk04568   132 DAKLERLAAKFKTPELAEEFKQKFEECQRL    161  

PF00638.9.fs: domain 1 of 2, from 40 to 161: score 283.0, E = 5.3e-82
                   *->EVktGEEDEevLFsqRAKLfRFdaevdlkeWKERGvGdiKILKnkdd
                      E++tGEE E+vL+sq +KLfRFdaev   +WKERG+G++KILKn+++
     hk04568    40    ELVTGEEGEKVLYSQGVKLFRFDAEV--RQWKERGLGNLKILKNEVN 84   

                   vgkvRiLMRRDqvLKVcANhyItptmtLQkPlaGSdrswvwtataDfaDg
                    gk+R+LMRR+qvLKVcANh+It+tm+L kPl+GSdr+w+w a +Df+Dg
     hk04568    85 -GKLRMLMRREQVLKVCANHWITTTMNL-KPLSGSDRAWMWSA-SDFSDG 131  

                   eaKpeqlAirFKtkEeAdeFKkkFEeaqke<-*
                   +aK+e lA++FKt+E A+eFK+kFEe+q+    
     hk04568   132 DAKLERLAAKFKTPELAEEFKQKFEECQRL    161  

PF00638.9.fs: domain 2 of 2, from 337 to 458: score 281.9, E = 1.2e-81
                   *->EVktGEEDEevLFsqRAKLfRFdaevdlkeWKERGvGdiKILKnkdd
                      EV++GEE+E+v+Fs+RA  +R+d++v  ++WKERG+GdiKIL+n+d+
     hk04568   337    EVSSGEENEQVVFSHRAEIYRYDKDV--GQWKERGIGDIKILQNYDN 381  

                   vgkvRiLMRRDqvLKVcANhyItptmtLQkPlaGSdrswvwtataDfaDg
                    ++vRi+MRRDqvLK+cANh+Itp+m L ++++G++r+wvwta +DfaDg
     hk04568   382 -KQVRIVMRRDQVLKLCANHRITPDMSL-QNMKGTERVWVWTA-CDFADG 428  

                   eaKpeqlAirFKtkEeAdeFKkkFEeaqke<-*
                   e+K+e+lA+rFK +++Ad+FKk+F+ea+++   
     hk04568   429 ERKVEHLAVRFKLQDVADSFKKIFDEAKTA    458  

PF00638.9.ls: domain 2 of 2, from 337 to 458: score 283.8, E = 3.1e-82
                   *->EVktGEEDEevLFsqRAKLfRFdaevdlkeWKERGvGdiKILKnkdd
                      EV++GEE+E+v+Fs+RA  +R+d++v  ++WKERG+GdiKIL+n+d+
     hk04568   337    EVSSGEENEQVVFSHRAEIYRYDKDV--GQWKERGIGDIKILQNYDN 381  

                   vgkvRiLMRRDqvLKVcANhyItptmtLQkPlaGSdrswvwtataDfaDg
                    ++vRi+MRRDqvLK+cANh+Itp+m L ++++G++r+wvwta +DfaDg
     hk04568   382 -KQVRIVMRRDQVLKLCANHRITPDMSL-QNMKGTERVWVWTA-CDFADG 428  

                   eaKpeqlAirFKtkEeAdeFKkkFEeaqke<-*
                   e+K+e+lA+rFK +++Ad+FKk+F+ea+++   
     hk04568   429 ERKVEHLAVRFKLQDVADSFKKIFDEAKTA    458  

PF01465.10.fs: domain 1 of 1, from 697 to 742: score 71.0, E = 3.7e-20
                   *->eganleYLKNVllqFLeskeseerkqLLpVistlLqFspeEkqkll<
                      ++anleYLKNVllqF+  k   er++LLpVi+t+Lq+speEk kl  
     hk04568   697    SAANLEYLKNVLLQFIFLKPGSERERLLPVINTMLQLSPEEKGKLA  742  

                   -*
                     
     hk04568     -    -    

PF01465.10.ls: domain 1 of 1, from 697 to 742: score 73.0, E = 9.1e-19
                   *->eganleYLKNVllqFLeskeseerkqLLpVistlLqFspeEkqkll<
                      ++anleYLKNVllqF+  k   er++LLpVi+t+Lq+speEk kl  
     hk04568   697    SAANLEYLKNVLLQFIFLKPGSERERLLPVINTMLQLSPEEKGKLA  742  

                   -*
                     
     hk04568     -    -    

//