hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-23222872/chunk_1/iprscan-20080812-23222872.nocrc
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Query sequence: hk04643
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00651.21.ls BTB/POZ domain                                 112.0    1.6e-30   1
PF00651.21.fs BTB/POZ domain                                 110.3    2.8e-30   1
PF00096.16.ls Zinc finger, C2H2 type                          54.7    2.8e-13   3
PF00096.16.fs Zinc finger, C2H2 type                          51.0    3.6e-12   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00651.21.fs   1/1      29   131 ..     1   135 []   110.3  2.8e-30
PF00651.21.ls   1/1      29   131 ..     1   135 []   112.0  1.6e-30
PF00096.16.ls   2/3     437   459 ..     1    24 []    19.6    0.011
PF00096.16.fs   3/3     466   488 ..     1    24 []    25.2  4.9e-05
PF00096.16.ls   3/3     466   488 ..     1    24 []    27.2  5.5e-05

Alignments of top-scoring domains:
PF00651.21.fs: domain 1 of 1, from 29 to 131: score 110.3, E = 2.8e-30
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                       n++r+ g lcDV+++v+         ++f+AH+ vLa+ S  F  l
     hk04643    29    ANQMRLAGTLCDVVIMVD--------SQEFHAHRTVLACTSKMFEIL 67   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F  +++            +++l++ sp++f+++Le++Yt++l+ +     
     hk04643    68 FHRNSQ------------HYTLDFLSPKTFQQILEYAYTATLQAK----- 100  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                          e+++dlL+aA + l+i++l ++C ++l ++    
     hk04643   101 ------AEDLDDLLYAA-EILEIEYLEEQCLKMLETIQ    131  

PF00651.21.ls: domain 1 of 1, from 29 to 131: score 112.0, E = 1.6e-30
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                       n++r+ g lcDV+++v+         ++f+AH+ vLa+ S  F  l
     hk04643    29    ANQMRLAGTLCDVVIMVD--------SQEFHAHRTVLACTSKMFEIL 67   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F  +++            +++l++ sp++f+++Le++Yt++l+ +     
     hk04643    68 FHRNSQ------------HYTLDFLSPKTFQQILEYAYTATLQAK----- 100  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                          e+++dlL+aA + l+i++l ++C ++l ++    
     hk04643   101 ------AEDLDDLLYAA-EILEIEYLEEQCLKMLETIQ    131  

PF00096.16.ls: domain 2 of 3, from 437 to 459: score 19.6, E = 0.011
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+  Cgk+F ++  L++Hl  H   
     hk04643   437    YGCE-LCGKRFLDSLRLRMHLLAH    459  

PF00096.16.fs: domain 3 of 3, from 466 to 488: score 25.2, E = 4.9e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cg  Fs  + L++H++tH   
     hk04643   466    FVCD-QCGAQFSKEDALETHRQTH    488  

PF00096.16.ls: domain 3 of 3, from 466 to 488: score 27.2, E = 5.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cg  Fs  + L++H++tH   
     hk04643   466    FVCD-QCGAQFSKEDALETHRQTH    488  

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