hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-23222872/chunk_1/iprscan-20080812-23222872.nocrc
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Query sequence: hk04643
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00225                                                  96.9    2.3e-24   1
SM00355                                                  65.1    9.1e-15   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1      39   131 ..     1   114 []    96.9  2.3e-24
SM00355      1/3     409   431 ..     1    23 []    16.3      4.3
SM00355      2/3     437   459 ..     1    23 []    21.8    0.099
SM00355      3/3     466   488 ..     1    23 []    27.0   0.0026

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 39 to 131: score 96.9, E = 2.3e-24
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDv+++v+          ++fha  H++vLa+    S  F+ lf  +
     hk04643    39    CDVVIMVDS---------QEFHA--HRTVLACT---SKMFEILFHRn 71   

                   ...ieldDeallievspeaFralLnflYt.kldlpeedvenveelLelAd
                   +++++ld+       sp++F+ +L++ Yt +l  + e   ++++lL++A+
     hk04643    72 sqhYTLDF------LSPKTFQQILEYAYTaTLQAKAE---DLDDLLYAAE 112  

                   fldSYGqip.lvelCeefllknl<-*
                    l    +i+ l e+C ++l++     
     hk04643   113 IL----EIEyLEEQCLKMLETIQ    131  

SM00355: domain 1 of 3, from 409 to 431: score 16.3, E = 4.3
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +C++ Cg   ++ +a ++H + H   
     hk04643   409    EQCSV-CGVELPDNeAVEQHRKLH    431  

SM00355: domain 2 of 3, from 437 to 459: score 21.8, E = 0.099
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk+f +   L+ H+  H   
     hk04643   437    YGCEL-CGKRFLDSlRLRMHLLAH    459  

SM00355: domain 3 of 3, from 466 to 488: score 27.0, E = 0.0026
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cg +fs ++aL+ H ++H   
     hk04643   466    FVCDQ-CGAQFSKEdALETHRQTH    488  

//