hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-23274041/chunk_1/iprscan-20080812-23274041.nocrc
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Query sequence: hk04772
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 445.2   3.3e-129   1
SM00220                                                 186.1    3.3e-51   1
SM00295                                                  37.7    1.6e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00295    1/1       1   169 [.     1   232 []    37.7  1.6e-06
SM00219    1/1     374   628 ..     1   280 []   445.2 3.3e-129
SM00220    1/1     374   632 ..     1   231 []   186.1  3.3e-51

Alignments of top-scoring domains:
SM00295: domain 1 of 1, from 1 to 169: score 37.7, E = 1.6e-06
                   *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey
                                       + e+d++    +++ ++    +l       
     hk04772     1    ----------------RKGEYDRYLASSKIMAAAYLDPNL------- 24   

                   FgLqfedkdedshWldpaktilkqdvkspksepltlyFRvkFyppdwhgp
                               h +                e++++ +R+++ p+ +   
     hk04772    25 -----------NHTP----------------EEWKYELRIRYLPKGF--- 44   

                   peqlkeDptrynllylQvrddilsGrlpcpseeeallLAaLalqaefGdy
                    +q++eD+ ++n++y+Qv++d++ + +   ++e al L++L +++ + ++
     hk04772    45 LNQFTEDKPTLNFFYQQVKSDYMLEIADQVDQEIALKLGCLEIRRSYWEM 94   

                   dpeeeekkkslkhvakelslkrflPkqlldsikasflqiqltlkewrerI
                     +++ekk+++++++k+++lkrf+Pk+llds+ka         k +r+ I
     hk04772    95 RGNALEKKSNYEVLEKDVGLKRFFPKSLLDSVKA---------KTLRKLI 135  

                   velhkehaglspeeaklkYLelarrLpptYGvelF<-*
                   ++ ++++a+l++ee+ lk++e+++    ++  e+F   
     hk04772   136 QQTFRQFANLNREESILKFFEILSPVY-RFDKECF    169  

SM00219: domain 1 of 1, from 374 to 628: score 445.2, E = 3.3e-129
                   *->ltlgkkLGeGaFGeVykGtlk......ieVAVKtLkeda....keeF
                      ++lg+ +GeG+FG V++G++ +++++ + VA+Kt+k++++++ +e F
     hk04772   374    IELGRCIGEGQFGDVHQGIYMspenpaLAVAIKTCKNCTsdsvREKF 420  

                   lrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLl
                   l+Ea  M+++  +Hp+iVkL+Gv+te         P++i+mE++ +G L+
     hk04772   421 LQEALTMRQF--DHPHIVKLIGVITE--------NPVWIIMELCTLGELR 460  

                   dyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk
                   ++L+ ++  l l+ L+ +A+Q +   +YLesk+fvHRD+AARN+Lv++n 
     hk04772   461 SFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSND 510  

                   vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkd
                   +vK +DFGLsR+ +d         yY+++    gk  lPi+WmAPEs+++
     hk04772   511 CVKLGDFGLSRYMEDS-------TYYKAS---KGK--LPIKWMAPESINF 548  

                   gkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRl
                   ++Fts+SDVW+FGV++WEi+  G +P  g     ++n +v+ ++++G+Rl
     hk04772   549 RRFTSASDVWMFGVCMWEILMHGVKPFQG-----VKNNDVIGRIENGERL 593  

                   pkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                   p P+n        CP+ lY+lM++CWa+dP+ RP+F+el+ +l   
     hk04772   594 PMPPN--------CPPTLYSLMTKCWAYDPSRRPRFTELKAQL    628  

SM00220: domain 1 of 1, from 374 to 632: score 186.1, E = 3.3e-51
                   *->YellkklGkGaFGkVylardkk...tgrlvAiKvik........eri
                       el++ +G+G FG V++++  ++++    vAiK  k+ ++++ +e++
     hk04772   374    IELGRCIGEGQFGDVHQGIYMSpenPALAVAIKTCKnctsdsvrEKF 420  

                   lrEikiLkk.dHPNIVkLydvfeddklylVmEyceGdlGdLfdllkkrgr
                   l+E   +++ dHP+IVkL++v+ ++ ++++mE+c    G+L+++l+ r++
     hk04772   421 LQEALTMRQfDHPHIVKLIGVITENPVWIIMELCTL--GELRSFLQVRKY 468  

                   rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvK
                         l+      y++Q+  aL+YL s++++HRD+   N+L++s+++vK
     hk04772   469 S-----LDLaSLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSndCVK 513  

                   laDFGlArql........ttfvGTpeYmAPEvl...gYgkpavDiWSlGc
                   l+DFGl+r +++++  + +       +mAPE ++ + ++  a+D+W +G+
     hk04772   514 LGDFGLSRYMedstyykaSKGKLPIKWMAPESInfrRFTS-ASDVWMFGV 562  

                   ilyEllt.GkpPFp..qldlifkkig...........SpeakdLikklLv
                   +++E l +G  PF++   + ++ +i ++++ + +++ +p + +L+ k++ 
     hk04772   563 CMWEILMhGVKPFQgvKNNDVIGRIEngerlpmppncPPTLYSLMTKCWA 612  

                   kdPekRlta.eaLedeldikaHPff<-*
                   +dP++R+  +e+ +      +   +   
     hk04772   613 YDPSRRPRFtELKA-----QLSTIL    632  

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