hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-23332827/chunk_1/iprscan-20080812-23332827.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hk04943
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00072                                                 145.7    4.7e-39   1
SM00326                                                  25.1     0.0096   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00326    1/1      73   137 ..     1    58 []    25.1   0.0096
SM00072    1/1     236   417 ..     1   203 []   145.7  4.7e-39

Alignments of top-scoring domains:
SM00326: domain 1 of 1, from 73 to 137: score 25.1, E = 0.0096
                   *->eyvvAlYDyea.......qnedELsFkkGDiitvleksddgWweGel
                      + v+   +y a ++++ +     +sF++ D ++v ek +++Ww G+l
     hk04943    73    FAVRTNVSYSAaheddvpVPGMAISFEAKDFLHVKEKFNNDWWIGRL 119  

                   nr.tGkeGlfPsnYVeeie<-*
                    ++  ++G++Ps  V++ +   
     hk04943   120 VKeGCEIGFIPSP-VKLEN    137  

SM00072: domain 1 of 1, from 236 to 417: score 145.7, E = 4.7e-39
                   *->drRpivLsGpsGvGKstlkakLlqeyPdypkfgfsVshTTRppRpgE
                       +Rp+vL Gp  ++K++ +++++q+     +++++++h +  + + +
     hk04943   236    SMRPVVLVGP--SLKGYEVTDMMQK-----ALFDFLKHRFEGRISIT 275  

                   vnGPvvDYhFvsLkeefeqdiksgkflEwgeysgnl.yYGTskesvrqva
                   +    +D++ ++ + ++++  k+ + +E+ + +++l   +  +e + + a
     hk04943   276 RVT--ADISLAK-RSVLNNPSKH-AIIERSNTRSSLaEVQSEIERIFELA 321  

                   ekGKhclLDid.pqgvkqlkkarRkselnpiviFIapPsleeleerlrga
                   ++++ ++LD+d++++  ql k+    +l pi+++++  s+++l++++++ 
     hk04943   322 RTLQLVVLDADtINHPAQLSKT----SLAPIIVYVKISSPKVLQRLIKS- 366  

                   eqRgteteeriqkrlaaaaqkeaqeyskeahlFdlvivnddledayYkeL
                     Rg++++++++ ++ a a+k+aq+++   +lFd ++++++leda+ ++L
     hk04943   367 --RGKSQAKHLNVQMVA-ADKLAQCPP---ELFDVILDENQLEDAC-EHL 409  

                   keileaeq<-*
                    ++lea++   
     hk04943   410 ADYLEAYW    417  

//