hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-23445153/chunk_1/iprscan-20080812-23445153.nocrc
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Query sequence: hk05083
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03178.5.ls CPSF A subunit region                          543.8   1.7e-160   1
PF03178.5.fs CPSF A subunit region                          541.9   6.3e-160   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03178.5.fs   1/1     837  1121 ..     1   334 []   541.9 6.3e-160
PF03178.5.ls   1/1     837  1121 ..     1   334 []   543.8 1.7e-160

Alignments of top-scoring domains:
PF03178.5.fs: domain 1 of 1, from 837 to 1121: score 541.9, E = 6.3e-160
                   *->ekevssirlidpntfevihdAsheFeqnEaalSvasvklsneettkd
                      e ev+++++id++tfev+h  +h+F qnE+alS++s+kl+     kd
     hk05083   837    EVEVHNLLIIDQHTFEVLH--AHQFLQNEYALSLVSCKLG-----KD 876  

                   kntYlvVGTainypeeietvPsrGrilvFevieVVPePGkPetgnKLklv
                   +ntY++VGTa++ypee e  P++Gri+vF++++           +KL++v
     hk05083   877 PNTYFIVGTAMVYPEEAE--PKQGRIVVFQYSD-----------GKLQTV 913  

                   aetevkGsVyalcefnGrllagiGqkvriydlteskknekeLrkesfidt
                   ae+evkG+Vy+++efnG+lla+i+++vr+y++t+    ekeLr+e+++++
     hk05083   914 AEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTT----EKELRTECNHYN 959  

                   piyildikvrgnfIlvaDvmkSvslLrykeeegqlievARDtnplwvtsv
                   +i++l++k++g+fIlv+D+m+Sv lL yk++eg+++e+ARD+np+w+++v
     hk05083   960 NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAV 1009 

                   efLdddtnLyflgaDasgNlfvlrydpeapeevdedptesKliwdrGlts
                   e+Lddd+   flga++ +Nlfv+++d++a+                  t+
     hk05083  1010 EILDDDN---FLGAENAFNLFVCQKDSAAT------------------TD 1038 

                   lerqkLesvgdFHlGetvnsmqhgslvmknlgdsygydtgaspsllfgTv
                   +erq+L++vg FHlGe+vn+++hgslvm+nlg++    t++++s+lfgTv
     hk05083  1039 EERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET---STPTQGSVLFGTV 1085 

                   dGaIGvivpliseedyrfLlqLqnaLrkvipslgGld<-*
                   +G+IG++++l se++y++Ll++qn+L+kvi+s+g+++   
     hk05083  1086 NGMIGLVTSL-SESWYNLLLDMQNRLNKVIKSVGKIE    1121 

PF03178.5.ls: domain 1 of 1, from 837 to 1121: score 543.8, E = 1.7e-160
                   *->ekevssirlidpntfevihdAsheFeqnEaalSvasvklsneettkd
                      e ev+++++id++tfev+h  +h+F qnE+alS++s+kl+     kd
     hk05083   837    EVEVHNLLIIDQHTFEVLH--AHQFLQNEYALSLVSCKLG-----KD 876  

                   kntYlvVGTainypeeietvPsrGrilvFevieVVPePGkPetgnKLklv
                   +ntY++VGTa++ypee e  P++Gri+vF++++           +KL++v
     hk05083   877 PNTYFIVGTAMVYPEEAE--PKQGRIVVFQYSD-----------GKLQTV 913  

                   aetevkGsVyalcefnGrllagiGqkvriydlteskknekeLrkesfidt
                   ae+evkG+Vy+++efnG+lla+i+++vr+y++t+    ekeLr+e+++++
     hk05083   914 AEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTT----EKELRTECNHYN 959  

                   piyildikvrgnfIlvaDvmkSvslLrykeeegqlievARDtnplwvtsv
                   +i++l++k++g+fIlv+D+m+Sv lL yk++eg+++e+ARD+np+w+++v
     hk05083   960 NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAV 1009 

                   efLdddtnLyflgaDasgNlfvlrydpeapeevdedptesKliwdrGlts
                   e+Lddd+   flga++ +Nlfv+++d++a+                  t+
     hk05083  1010 EILDDDN---FLGAENAFNLFVCQKDSAAT------------------TD 1038 

                   lerqkLesvgdFHlGetvnsmqhgslvmknlgdsygydtgaspsllfgTv
                   +erq+L++vg FHlGe+vn+++hgslvm+nlg++    t++++s+lfgTv
     hk05083  1039 EERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET---STPTQGSVLFGTV 1085 

                   dGaIGvivpliseedyrfLlqLqnaLrkvipslgGld<-*
                   +G+IG++++l se++y++Ll++qn+L+kvi+s+g+++   
     hk05083  1086 NGMIGLVTSL-SESWYNLLLDMQNRLNKVIKSVGKIE    1121 

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