hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-23501433/chunk_1/iprscan-20080812-23501433.nocrc
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Query sequence: hk05319
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00664.13.ls ABC transporter transmembrane region       170.7    3.5e-48   1
PF00664.13.fs ABC transporter transmembrane region       168.7    1.4e-47   1
PF00005.17.ls ABC transporter                            146.1    8.6e-41   1
PF00005.17.fs ABC transporter                            144.3    3.1e-40   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00664.13.fs   1/1     332   604 ..     1   286 []   168.7  1.4e-47
PF00664.13.ls   1/1     332   604 ..     1   286 []   170.7  3.5e-48
PF00005.17.fs   1/1     710   909 ..     1   224 []   144.3  3.1e-40
PF00005.17.ls   1/1     710   909 ..     1   224 []   146.1  8.6e-41

Alignments of top-scoring domains:
PF00664.13.fs: domain 1 of 1, from 332 to 604: score 168.7, E = 1.4e-47
                   *->lligilllilagatalvtfplllgrfldsgfplsdgnddhearssli
                      l+i++++  l++ + ++ +p    + + +   +s++  +  + ++++
     hk05319   332    LCIFGIVDHLGKENDVF-QPKTQFLGVYF---VSSQ--E--FLANAY 370  

                   slailsllavfvlqglllqgsfyllAgerlgqrlrkrlfrallrqilglf
                    la+l l+++++lq  +lq+s+y+  ++ +g++lr ++ ++++++i++l+
     hk05319   371 VLAVL-LFLALLLQRTFLQASYYV--AIETGINLRGAIQTKIYNKIMHLS 417  

                   dsff..dtnsvGeltsRltnDvskirdglgdklgllfqslatvvgglivm
                    s ++  ++++G+++++++ D++++++++ +   l+ ++++++vg+++++
     hk05319   418 TSNLsmGEMTAGQICNLVAIDTNQLMWFFFLCPNLWAMPVQIIVGVILLY 467  

                   fyyswkLtLvllailpllillsavlakklrklnrkeqkayakagsvaeEs
                   ++++++++++   ++ ll+++++++a kl++++r + +  +++ + ++E+
     hk05319   468 YILGVSALIGAA-VIILLAPVQYFVATKLSQAQRSTLEYSNERLKQTNEM 516  

                   lsgirTVkafgrEeyelerydkaledaekagikkaiiagllfgitqlisy
                   l+gi+ +k++++E ++++r +  ++ +e +++++ +i+  ++++++ +++
     hk05319   517 LRGIKLLKLYAWENIFRTRVETTRR-KEMTSLRAFAIYTSISIFMNTAIP 565  

                   lsyalalwfGgylvasvisgglsvgtlfaflslgnqltgpl<-*
                   +  a+ ++f g+ + + +  + s+   fa+lsl+++l  pl   
     hk05319   566 I-AAVLITFVGHVS-FFKEADFSPSVAFASLSLFHILVTPL    604  

PF00664.13.ls: domain 1 of 1, from 332 to 604: score 170.7, E = 3.5e-48
                   *->lligilllilagatalvtfplllgrfldsgfplsdgnddhearssli
                      l+i++++  l++ + ++ +p    + + +   +s++  +  + ++++
     hk05319   332    LCIFGIVDHLGKENDVF-QPKTQFLGVYF---VSSQ--E--FLANAY 370  

                   slailsllavfvlqglllqgsfyllAgerlgqrlrkrlfrallrqilglf
                    la+l l+++++lq  +lq+s+y+  ++ +g++lr ++ ++++++i++l+
     hk05319   371 VLAVL-LFLALLLQRTFLQASYYV--AIETGINLRGAIQTKIYNKIMHLS 417  

                   dsff..dtnsvGeltsRltnDvskirdglgdklgllfqslatvvgglivm
                    s ++  ++++G+++++++ D++++++++ +   l+ ++++++vg+++++
     hk05319   418 TSNLsmGEMTAGQICNLVAIDTNQLMWFFFLCPNLWAMPVQIIVGVILLY 467  

                   fyyswkLtLvllailpllillsavlakklrklnrkeqkayakagsvaeEs
                   ++++++++++   ++ ll+++++++a kl++++r + +  +++ + ++E+
     hk05319   468 YILGVSALIGAA-VIILLAPVQYFVATKLSQAQRSTLEYSNERLKQTNEM 516  

                   lsgirTVkafgrEeyelerydkaledaekagikkaiiagllfgitqlisy
                   l+gi+ +k++++E ++++r +  ++ +e +++++ +i+  ++++++ +++
     hk05319   517 LRGIKLLKLYAWENIFRTRVETTRR-KEMTSLRAFAIYTSISIFMNTAIP 565  

                   lsyalalwfGgylvasvisgglsvgtlfaflslgnqltgpl<-*
                   +  a+ ++f g+ + + +  + s+   fa+lsl+++l  pl   
     hk05319   566 I-AAVLITFVGHVS-FFKEADFSPSVAFASLSLFHILVTPL    604  

PF00005.17.fs: domain 1 of 1, from 710 to 909: score 144.3, E = 3.1e-40
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xx
                   *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkel.gr
                      G+++ +vG  G+GKS+LL + +G+ +     +G + +      l++ 
     hk05319   710    GQLTMIVGQVGCGKSSLLLAALGEMQ-KV--SGAVFWS----SLpDS 749  

                RF xxxxxxxxxxxx     xxxx  xxxxxxxxxxxxxxxxxxxxxxxxxxx
                   dltdlssrerer.....lrkr..igyvfQdpnlfldprlTvrenlayglp
                   ++ +++s ere+ ++ ++rkr++++y +Q+p+l+   + Tv+en+ +  p
     hk05319   750 EIGEDPSPERETatdldIRKRgpVAYASQKPWLL---NATVEENIIFESP 796  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   dkkaggkereallrllgleeeadaraeeaLervGlpdladrsnLpqgydt
                   +                     ++r   ++e + l +++d   Lp g+ t
     hk05319   797 F--------------------NKQRYKMVIEACSLQPDIDI--LPHGDQT 824  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   vlgerpgtLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllel
                   + ger+ +LSGGq+QR++ ARal++++++++LD P+++LD++  ++l+++
     hk05319   825 QIGERGINLSGGQRQRISVARALYQHANVVFLDDPFSALDIHLSDHLMQA 874  

                RF  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   .lrelrgeqgitvllitHdldlldrladrilvlenG<-*
                   ++ el ++  +tv+l+tH l+ l + ad+i+ +++G   
     hk05319   875 gILELLRDDKRTVVLVTHKLQYLPH-ADWIIAMKDG    909  

PF00005.17.ls: domain 1 of 1, from 710 to 909: score 146.1, E = 8.6e-41
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xx
                   *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkel.gr
                      G+++ +vG  G+GKS+LL + +G+ +     +G + +      l++ 
     hk05319   710    GQLTMIVGQVGCGKSSLLLAALGEMQ-KV--SGAVFWS----SLpDS 749  

                RF xxxxxxxxxxxx     xxxx  xxxxxxxxxxxxxxxxxxxxxxxxxxx
                   dltdlssrerer.....lrkr..igyvfQdpnlfldprlTvrenlayglp
                   ++ +++s ere+ ++ ++rkr++++y +Q+p+l+   + Tv+en+ +  p
     hk05319   750 EIGEDPSPERETatdldIRKRgpVAYASQKPWLL---NATVEENIIFESP 796  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   dkkaggkereallrllgleeeadaraeeaLervGlpdladrsnLpqgydt
                   +                     ++r   ++e + l +++d   Lp g+ t
     hk05319   797 F--------------------NKQRYKMVIEACSLQPDIDI--LPHGDQT 824  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   vlgerpgtLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllel
                   + ger+ +LSGGq+QR++ ARal++++++++LD P+++LD++  ++l+++
     hk05319   825 QIGERGINLSGGQRQRISVARALYQHANVVFLDDPFSALDIHLSDHLMQA 874  

                RF  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   .lrelrgeqgitvllitHdldlldrladrilvlenG<-*
                   ++ el ++  +tv+l+tH l+ l + ad+i+ +++G   
     hk05319   875 gILELLRDDKRTVVLVTHKLQYLPH-ADWIIAMKDG    909  

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