hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-23501433/chunk_1/iprscan-20080812-23501433.nocrc
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Query sequence: hk05319
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                  57.7    1.5e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00382    1/1     709   917 ..     1    92 []    57.7  1.5e-12

Alignments of top-scoring domains:
SM00382: domain 1 of 1, from 709 to 917: score 57.7, E = 1.5e-12
                   *->pgevvllvGppGsGKTTlaralarllgp...gviyidge........
                      +g+ +++vG  G+GK+ l++a ++++++ ++ v+  ++++++ +++ 
     hk05319   709    RGQLTMIVGQVGCGKSSLLLAALGEMQKvsgAVFWSSLPdseigedp 755  

                   ..................................................
                   + +++   + + ++++     +++    +   +++   ++  ++++ +  
     hk05319   756 speretatdldirkrgpvayasqkpwllnatveeniifespfnkqrykmv 805  

                   .............................ggqrirlalalark...dvll
                    +  + + + +   ++++ + ++++ + +ggqr+r+ +a+a +++  v++
     hk05319   806 ieacslqpdidilphgdqtqigerginlsGGQRQRISVARALYqhaNVVF 855  

                   lDEitslld....................vtviattn..dldpallrr..
                   lD+++s+ld ++++++ + + +++++++++tv+++t++   +p++  +  
     hk05319   856 LDDPFSALDihlsdhlmqagilellrddkRTVVLVTHklQYLPHADWIia 905  

                   rfdrrivllril<-*
                   + d  i+ +  l   
     hk05319   906 MKDGTIQREGTL    917  

//