hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-23552886/chunk_1/iprscan-20080812-23552886.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk05436 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00060.17.ls Ligand-gated ion channel 385.6 6.7e-113 1 PF00060.17.fs Ligand-gated ion channel 383.8 2.3e-112 1 PF01094.18.fs Receptor family ligand binding region 108.6 1.7e-29 1 PF01094.18.ls Receptor family ligand binding region 98.6 1.7e-26 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01094.18.ls 1/1 62 383 .. 1 421 [] 98.6 1.7e-26 PF01094.18.fs 1/1 130 383 .. 75 421 .] 108.6 1.7e-29 PF00060.17.fs 1/1 584 859 .. 1 304 [] 383.8 2.3e-112 PF00060.17.ls 1/1 584 859 .. 1 304 [] 385.6 6.7e-113 Alignments of top-scoring domains: PF01094.18.ls: domain 1 of 1, from 62 to 383: score 98.6, E = 1.7e-26 *->qvlpAmrlAiediNadggillpgitlgvedddtcs.dsalcsslsFd ++ +r A+ N+++g +++++ t ++ hk05436 62 KHEQMFREAVNQANKRHG------SWKIQLNATSVtHK--------P 94 d.aavaaaacl.lkskgVvaii.....GPscssvaiavarlanewgiPli + ++a+ +c++l s++V+ai+ ++++ P + ++v+ a+ ++iP++ hk05436 95 NaIQMALSVCEdLISSQVYAILvshppTPNDHFTPTPVSYTAGFYRIPVL 144 sygatapslsdklknryptfaRtvpsdtkqgaAiadilkhtfgWkrvavi + + sd k+ + +f+Rtvp++++q+ + ++++ + W+++ ++ hk05436 145 GLTTRMSIYSD--KSIHLSFLRTVPPYSHQSSVWFEMMRV-YSWNHIILL 191 yddddydygeggcYFtlealedalkeaggkvvavAqasdvvvvsevissd ++dd g+ ++le++l+e++ k v ++++++ hk05436 192 VSDDHE--GRAA----QKRLETLLEERESKAEKV---------LQFDPGT 226 ddftallkelkdlikskarvivlcgssddlgllkrqilrqarelGlmsgg ++ tall e k+ +arvi+l +s+dd+ + r+a l++++ g hk05436 227 KNVTALLMEAKE---LEARVIILSASEDDA----ATVYRAAAMLNMTGSG 269 YvwiltdlwsdsldsqgdgsdlpwariagadeGlltartfpfqldndkar Yvw++ + + ++r hk05436 270 YVWLVGERE----------------------------------ISGNALR 285 eaakgvlgitlkpspefqeflerlkksdtevnayallaYDAVyllAhAln +a +g+lg++l ++++ DAV ++A+A++ hk05436 286 YAPDGILGLQL-----------------INGKNESAHISDAVGVVAQAVH 318 ealrddpngtaglcnacrdsrvddasnalgglnlglmkw.dGsqlleylr e+l+++ + ++ + + + + w+ G+ + + l hk05436 319 ELLEKENITDPPRGCVGNT-----------------NIWkTGPLFKRVLM 351 nkvnF.eGltGdvqfddnggrrpdyslvilnwdg<-* ++ +G+tG+v f++ +g+r ++ i+n ++ hk05436 352 S-SKYaDGVTGRVEFNE-DGDRKFANYSIMNLQN 383 PF01094.18.fs: domain 1 of 1, from 130 to 383: score 108.6, E = 1.7e-29 *->iavarlanewgiPlisygatapslsdklknryptfaRtvpsdtkqga ++v+ a+ ++iP+++ + sd k+ + +f+Rtvp++++q+ hk05436 130 TPVSYTAGFYRIPVLGLTTRMSIYSD--KSIHLSFLRTVPPYSHQSS 174 AiadilkhtfgWkrvaviyddddydygeggcYFtlealedalkeaggkvv + ++++ + W+++ ++++dd g+ ++le++l+e++ k hk05436 175 VWFEMMRV-YSWNHIILLVSDDHE--GRAA----QKRLETLLEERESKAE 217 avAqasdvvvvsevissdddftallkelkdlikskarvivlcgssddlgl v ++++++++ tall e k+ +arvi+l +s+dd+ hk05436 218 KV---------LQFDPGTKNVTALLMEAKE---LEARVIILSASEDDA-- 253 lkrqilrqarelGlmsggYvwiltdlwsdsldsqgdgsdlpwariagade + r+a l++++ gYvw++ + hk05436 254 --ATVYRAAAMLNMTGSGYVWLVGERE----------------------- 278 Glltartfpfqldndkareaakgvlgitlkpspefqeflerlkksdtevn + ++r+a +g+lg++l hk05436 279 -----------ISGNALRYAPDGILGLQL-----------------INGK 300 ayallaYDAVyllAhAlnealrddpngtaglcnacrdsrvddasnalggl ++++ DAV ++A+A++e+l+++ + ++ + + + hk05436 301 NESAHISDAVGVVAQAVHELLEKENITDPPRGCVGNT------------- 337 nlglmkw.dGsqlleylrnkvnF.eGltGdvqfddnggrrpdyslvilnw + w+ G+ + + l ++ +G+tG+v f++ +g+r ++ i+n hk05436 338 ----NIWkTGPLFKRVLMS-SKYaDGVTGRVEFNE-DGDRKFANYSIMNL 381 dg<-* ++ hk05436 382 QN 383 PF00060.17.fs: domain 1 of 1, from 584 to 859: score 383.8, E = 2.3e-112 *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcneddqsp ++++Wl +++++ +v+v+l+l++r fsP++++ ++ s+ hk05436 584 QSTLWLLVGLSVHVVAVMLYLLDR-FSPFGRFKVN----------SE 619 eeepnqftlsnslWFsfgalmq.QGcdelPrslSgRivvgvWwfFaLili eee+ tls+++WFs+g+l++++ ++ +Prs+S+Ri+++vW+ Fa+i++ hk05436 620 EEEEDALTLSSAMWFSWGVLLNsGIGEGAPRSFSARILGMVWAGFAMIIV 669 sSYTANLAAFLTvermqspIesleDLakqnpkieYGtlrggstftffkes +SYTANLAAFL+++r+++ I++++D++++np + + + +++++++++ hk05436 670 ASYTANLAAFLVLDRPEERITGINDPRLRNPSDK---FIYATVKQSSVDI 716 kiptyrrmweymnsrkgrskaPsvfvksyeeGvqrVrngpenglyAFlmE + +rr +e ++++++ + ++++s++e++q+Vr++ +l AF+++ hk05436 717 Y---FRRQVELSTMYRHM---EKHNYESAAEAIQAVRDN---KLHAFIWD 757 styleyevarnpdCdLttvGevlfgtkGYGIAlpkgSPlrdklslAILeL s++le+e++++ CdL+t Ge lf ++G+GI+++k+SP+++++sl+IL+ hk05436 758 SAVLEFEASQK--CDLVTTGE-LFFRSGFGIGMRKDSPWKQNVSLSILKS 804 sEsGelekLenKWwkkkgkCpsestavsssqLglenfaGlFliLgiGlvL +E+G++e+L++ W ++ +C+s s+ +++ L++en+aG+F+++++G+v hk05436 805 HENGFMEDLDKTWVRYQ-ECDSRSN--APATLTFENMAGVFMLVAGGIVA 851 allvalfE<-* ++++ ++E hk05436 852 GIFLIFIE 859 PF00060.17.ls: domain 1 of 1, from 584 to 859: score 385.6, E = 6.7e-113 *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcneddqsp ++++Wl +++++ +v+v+l+l++r fsP++++ ++ s+ hk05436 584 QSTLWLLVGLSVHVVAVMLYLLDR-FSPFGRFKVN----------SE 619 eeepnqftlsnslWFsfgalmq.QGcdelPrslSgRivvgvWwfFaLili eee+ tls+++WFs+g+l++++ ++ +Prs+S+Ri+++vW+ Fa+i++ hk05436 620 EEEEDALTLSSAMWFSWGVLLNsGIGEGAPRSFSARILGMVWAGFAMIIV 669 sSYTANLAAFLTvermqspIesleDLakqnpkieYGtlrggstftffkes +SYTANLAAFL+++r+++ I++++D++++np + + + +++++++++ hk05436 670 ASYTANLAAFLVLDRPEERITGINDPRLRNPSDK---FIYATVKQSSVDI 716 kiptyrrmweymnsrkgrskaPsvfvksyeeGvqrVrngpenglyAFlmE + +rr +e ++++++ + ++++s++e++q+Vr++ +l AF+++ hk05436 717 Y---FRRQVELSTMYRHM---EKHNYESAAEAIQAVRDN---KLHAFIWD 757 styleyevarnpdCdLttvGevlfgtkGYGIAlpkgSPlrdklslAILeL s++le+e++++ CdL+t Ge lf ++G+GI+++k+SP+++++sl+IL+ hk05436 758 SAVLEFEASQK--CDLVTTGE-LFFRSGFGIGMRKDSPWKQNVSLSILKS 804 sEsGelekLenKWwkkkgkCpsestavsssqLglenfaGlFliLgiGlvL +E+G++e+L++ W ++ +C+s s+ +++ L++en+aG+F+++++G+v hk05436 805 HENGFMEDLDKTWVRYQ-ECDSRSN--APATLTFENMAGVFMLVAGGIVA 851 allvalfE<-* ++++ ++E hk05436 852 GIFLIFIE 859 //