hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-23552886/chunk_1/iprscan-20080812-23552886.nocrc
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Query sequence: hk05436
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00079                                                 340.6      1e-97   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00079    1/1     458   820 ..     1   296 []   340.6    1e-97

Alignments of top-scoring domains:
SM00079: domain 1 of 1, from 458 to 820: score 340.6, E = 1e-97
                   *->tlkVttrilekPfvmfkknpeglkiDPitgnkcfeGyCIDLlealak
                      ++++t      P     ++p+++       ++c++G+CIDLl++la 
     hk05436   458    KVICTG-----PNDTSPGSPRHT------VPQCCYGFCIDLLIKLAR 493  

                   ilgFtYelelVpDGkYGskdant....gnWnGmIgeLirgeADmAVapLT
                    ++FtYe++lV DGk+G++++ +++++++WnGm+geL++g ADm+VapLT
     hk05436   494 TMNFTYEVHLVADGKFGTQERVNnsnkKEWNGMMGELLSGQADMIVAPLT 543  

                   ItaeRervVDFTkPFmelGIsILvkkpdkqksslfsFLePfskkLAAfLT
                   I+ eR++++ F+kPF ++G++ILvkk+ + +s+l sF++Pf+     +L 
     hk05436   544 INNERAQYIEFSKPFKYQGLTILVKKEIP-RSTLDSFMQPFQST--LWLL 590  

                   vermesp...........................................
                   v   ++         ++ ++ ++ + ++++++++  + ++    + +   
     hk05436   591 VGLSVHVvavmlylldrfspfgrfkvnseeeeedaltlssamwfswgvll 640  

                   ................................................Is
                   +++ +++ +++ + +  +    +       + + +       ++++++I+
     hk05436   641 nsgigegaprsfsarilgmvwagfamiivasytanlaaflvldrpeerIT 690  

                   sveDLakrnpQtkieyGTvrgssTeefFkrpSkiptysrmwryMssrsks
                   +++D+++rnp++k+ y+Tv+ ss++ +F+r   +++ s m+r+M      
     hk05436   691 GINDPRLRNPSDKFIYATVKQSSVDIYFRR---QVELSTMYRHM------ 731  

                   psvfvkslseGvqrvlnskGnYAFlmEstyleYeasrDpnCdYKLvtvGe
                   ++++++s++e++q+v+  k ++AF+++s++le+eas+   Cd  Lvt+Ge
     hk05436   732 EKHNYESAAEAIQAVRDNK-LHAFIWDSAVLEFEASQ--KCD--LVTTGE 776  

                   vfgskGYGIAlpkgSPlrdklSrAILkLsEsGeLekLknKWwkk<-*
                   +f ++G+GI++ k+SP+++++S++ILk +E+G++e+L++ W ++   
     hk05436   777 LFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRY    820  

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