hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-00072042/chunk_1/iprscan-20080813-00072042.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk05555 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02233.7.ls NAD(P) transhydrogenase beta subunit 1109.3 0 1 PF02233.7.fs NAD(P) transhydrogenase beta subunit 1107.6 0 1 PF01262.12.ls Alanine dehydrogenase/PNT, C-terminal dom 297.0 3.2e-86 1 PF01262.12.fs Alanine dehydrogenase/PNT, C-terminal dom 295.2 1.2e-85 1 PF05222.5.ls Alanine dehydrogenase/PNT, N-terminal dom 203.2 5.7e-58 1 PF05222.5.fs Alanine dehydrogenase/PNT, N-terminal dom 201.2 1.5e-57 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05222.5.ls 1/1 109 248 .. 1 138 [] 203.2 5.7e-58 PF05222.5.fs 1/1 109 248 .. 1 138 [] 201.2 1.5e-57 PF01262.12.fs 1/1 257 427 .. 1 185 [] 295.2 1.2e-85 PF01262.12.ls 1/1 257 427 .. 1 185 [] 297.0 3.2e-86 PF02233.7.fs 1/1 667 1129 .. 1 510 [] 1107.6 0 PF02233.7.ls 1/1 667 1129 .. 1 510 [] 1109.3 0 Alignments of top-scoring domains: PF05222.5.ls: domain 1 of 1, from 109 to 248: score 203.2, E = 5.7e-58 *->GvPkEiknnEnRVAlTPagVkkLvkaGheVlVEtgAGagsgfpDeeY GvPkEi++nE+RVAl+PagV+ Lvk+G+ V+VE+gAG++s f+D+ Y hk05555 109 GVPKEIFQNEKRVALSPAGVQNLVKQGFNVVVESGAGEASKFSDDHY 155 eaAGAkIvetaadvwadadmvvKVkePl......aeEyaylreGqiLfty + AGA+I +a++v ++d+vvKV++P +++ + +E+++l+ +L+++ hk05555 156 RVAGAQI-QGAKEVL-ASDLVVKVRAPMvnptlgVHEADLLKTSGTLISF 203 LhlAqegnpeLleaLlekgvtaiAyEtVprisrAQslplLspManvA<-* +++Aq npeLl +L ++++t++A++ Vpr + AQ +++Ls+Man+A hk05555 204 IYPAQ--NPELLNKLSQRKTTVLAMDQVPRVTIAQGYDALSSMANIA 248 PF05222.5.fs: domain 1 of 1, from 109 to 248: score 201.2, E = 1.5e-57 *->GvPkEiknnEnRVAlTPagVkkLvkaGheVlVEtgAGagsgfpDeeY GvPkEi++nE+RVAl+PagV+ Lvk+G+ V+VE+gAG++s f+D+ Y hk05555 109 GVPKEIFQNEKRVALSPAGVQNLVKQGFNVVVESGAGEASKFSDDHY 155 eaAGAkIvetaadvwadadmvvKVkePl......aeEyaylreGqiLfty + AGA+I +a++v ++d+vvKV++P +++ + +E+++l+ +L+++ hk05555 156 RVAGAQI-QGAKEVL-ASDLVVKVRAPMvnptlgVHEADLLKTSGTLISF 203 LhlAqegnpeLleaLlekgvtaiAyEtVprisrAQslplLspManvA<-* +++Aq npeLl +L ++++t++A++ Vpr + AQ +++Ls+Man+A hk05555 204 IYPAQ--NPELLNKLSQRKTTVLAMDQVPRVTIAQGYDALSSMANIA 248 PF01262.12.fs: domain 1 of 1, from 257 to 427: score 295.2, E = 1.2e-85 *->lekygggfgmLlggaggVpPAkVvViGgGVaGlqAaatAkgLGAvVt ++++g++f++++++ag+VpPAk+++ GgGVaGl+ a++Ak++GA+V+ hk05555 257 ANHFGRFFTGQITAAGKVPPAKILIVGGGVAGLASAGAAKSMGAIVR 303 ilDvrparleqleslfagfvetdrstsdeekedaegagGYAkemseefla ++D+r a+leq sl+a+ +e+d ke++eg+gGYAkems+ef++ hk05555 304 GFDTRAAALEQFKSLGAEPLEVD------LKESGEGQGGYAKEMSKEFIE 347 snaeliaeaikeaDlVIgtvLiPGakAPkLVtremvksMkPGSViVDvAi ++++l+a+++ke+D++I t+LiPG+kAP+L +em++sMk GSV+VD+A+ hk05555 348 AEMKLFAQQCKEVDILISTALIPGKKAPVLFNKEMIESMKEGSVVVDLAA 397 dqGdnGnvEtsrptTtiHsdptyvvdGVvhygvaNmPg<-* + G Gn+Et++p+ + y+ +G++h+g++++P+ hk05555 398 EAG--GNFETTKPG------ELYIHKGITHIGYTDLPS 427 PF01262.12.ls: domain 1 of 1, from 257 to 427: score 297.0, E = 3.2e-86 *->lekygggfgmLlggaggVpPAkVvViGgGVaGlqAaatAkgLGAvVt ++++g++f++++++ag+VpPAk+++ GgGVaGl+ a++Ak++GA+V+ hk05555 257 ANHFGRFFTGQITAAGKVPPAKILIVGGGVAGLASAGAAKSMGAIVR 303 ilDvrparleqleslfagfvetdrstsdeekedaegagGYAkemseefla ++D+r a+leq sl+a+ +e+d ke++eg+gGYAkems+ef++ hk05555 304 GFDTRAAALEQFKSLGAEPLEVD------LKESGEGQGGYAKEMSKEFIE 347 snaeliaeaikeaDlVIgtvLiPGakAPkLVtremvksMkPGSViVDvAi ++++l+a+++ke+D++I t+LiPG+kAP+L +em++sMk GSV+VD+A+ hk05555 348 AEMKLFAQQCKEVDILISTALIPGKKAPVLFNKEMIESMKEGSVVVDLAA 397 dqGdnGnvEtsrptTtiHsdptyvvdGVvhygvaNmPg<-* + G Gn+Et++p+ + y+ +G++h+g++++P+ hk05555 398 EAG--GNFETTKPG------ELYIHKGITHIGYTDLPS 427 PF02233.7.fs: domain 1 of 1, from 667 to 1129: score 1107.6, E = 0 *->sLvqaaYlgniiaalcFIlsLrGLStqeTArrGNilGivGMtiAviA +++q++Ylg ++lc++++L+GLStq TAr+GN+lG++G++++ +A hk05555 667 NIEQIMYLG---SGLCCVGALAGLSTQGTARLGNALGMIGVAGG-LA 709 tvlgpdetgfgPevYGeetGktiiylLiqiigaiaiGgaIGlviAkrVeM ++lg +++g++ lL+q++ga+a+Gg+IGl+iAkr+++ hk05555 710 ATLGVLKPGPE--------------LLAQMSGAMALGGTIGLTIAKRIQI 745 TamPQLVAaFHSFVGLAAVLVgiAnflleeeagiedageyteenqFslav +++PQLVAaFHS+VGLAAVL++iA++++e++++++da+ a+ hk05555 746 SDLPQLVAAFHSLVGLAAVLTCIAEYIIEYPHFATDAA----------AN 785 iilvEvylGvfIGavTFtGSiVAFGKLqGiisSkPlmLPgnaRHvLNlaL ++++++ylG++IG+vTF+GS++A+GKLqG+++S+Pl+LPg RH+LN++L hk05555 786 LTKIVAYLGTYIGGVTFSGSLIAYGKLQGLLKSAPLLLPG--RHLLNAGL 833 lavsvlllvvFmlseshttgmlaLllmtetYvYinGGiLivvlaislvlG la+sv+++++Fm+++s+ttg+++L++ v+a+s+v+G hk05555 834 LAASVGGIIPFMVDPSFTTGITCLGS---------------VSALSAVMG 868 lhLVaaIGGADMPVVISMLNSYSGwAaAAaGFmLnNdLLIiaGALiGSSG ++L+aaIGGADMPVVI++LNSYSGwA++A+GF+LnN+LL+i+GALiGSSG hk05555 869 VTLTAAIGGADMPVVITVLNSYSGWALCAEGFLLNNNLLTIVGALIGSSG 918 AILSYIMCKAMNRSlinVIlGGFGtegsvgagkgdadidgevkeitaeea AILSYIMC+AMNRSl+nVIlGG+Gt+ s+++gk+++ i+g+++ei+ ++a hk05555 919 AILSYIMCVAMNRSLANVILGGYGTT-STAGGKPME-ISGTHTEINLDNA 966 AdlLlnAssVIIVPGYGMAVAQAQhpvadlaklLeerGveVrFaIHPVAG +d++++A+s+II+PGYG+++A+AQ+p+adl+k+L e+G++VrF+IHPVAG hk05555 967 IDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAG 1016 RMPGHMNVLLAEAnVPYDiVlEMdEINeDFadtDVvLVIGANDTvNPAAk RMPG++NVLLAEA+VPYDiVlEMdEIN+DF+dtD+vLVIGANDTvN+AA+ hk05555 1017 RMPGQLNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQ 1066 eDPnSpIaGMPvLeVwKAkqViVlKRSMasGYAGVdNPLFfkeNTqMLFG eDPnS+IaGMPvLeVwK+kqViV+KRS+++GYA+VdNP+F+k+NT+ML+G hk05555 1067 EDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLG 1116 DAKKtveeileel<-* DAKKt++++++++ hk05555 1117 DAKKTCDALQAKV 1129 PF02233.7.ls: domain 1 of 1, from 667 to 1129: score 1109.3, E = 0 *->sLvqaaYlgniiaalcFIlsLrGLStqeTArrGNilGivGMtiAviA +++q++Ylg ++lc++++L+GLStq TAr+GN+lG++G++++ +A hk05555 667 NIEQIMYLG---SGLCCVGALAGLSTQGTARLGNALGMIGVAGG-LA 709 tvlgpdetgfgPevYGeetGktiiylLiqiigaiaiGgaIGlviAkrVeM ++lg +++g++ lL+q++ga+a+Gg+IGl+iAkr+++ hk05555 710 ATLGVLKPGPE--------------LLAQMSGAMALGGTIGLTIAKRIQI 745 TamPQLVAaFHSFVGLAAVLVgiAnflleeeagiedageyteenqFslav +++PQLVAaFHS+VGLAAVL++iA++++e++++++da+ a+ hk05555 746 SDLPQLVAAFHSLVGLAAVLTCIAEYIIEYPHFATDAA----------AN 785 iilvEvylGvfIGavTFtGSiVAFGKLqGiisSkPlmLPgnaRHvLNlaL ++++++ylG++IG+vTF+GS++A+GKLqG+++S+Pl+LPg RH+LN++L hk05555 786 LTKIVAYLGTYIGGVTFSGSLIAYGKLQGLLKSAPLLLPG--RHLLNAGL 833 lavsvlllvvFmlseshttgmlaLllmtetYvYinGGiLivvlaislvlG la+sv+++++Fm+++s+ttg+++L++ v+a+s+v+G hk05555 834 LAASVGGIIPFMVDPSFTTGITCLGS---------------VSALSAVMG 868 lhLVaaIGGADMPVVISMLNSYSGwAaAAaGFmLnNdLLIiaGALiGSSG ++L+aaIGGADMPVVI++LNSYSGwA++A+GF+LnN+LL+i+GALiGSSG hk05555 869 VTLTAAIGGADMPVVITVLNSYSGWALCAEGFLLNNNLLTIVGALIGSSG 918 AILSYIMCKAMNRSlinVIlGGFGtegsvgagkgdadidgevkeitaeea AILSYIMC+AMNRSl+nVIlGG+Gt+ s+++gk+++ i+g+++ei+ ++a hk05555 919 AILSYIMCVAMNRSLANVILGGYGTT-STAGGKPME-ISGTHTEINLDNA 966 AdlLlnAssVIIVPGYGMAVAQAQhpvadlaklLeerGveVrFaIHPVAG +d++++A+s+II+PGYG+++A+AQ+p+adl+k+L e+G++VrF+IHPVAG hk05555 967 IDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAG 1016 RMPGHMNVLLAEAnVPYDiVlEMdEINeDFadtDVvLVIGANDTvNPAAk RMPG++NVLLAEA+VPYDiVlEMdEIN+DF+dtD+vLVIGANDTvN+AA+ hk05555 1017 RMPGQLNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQ 1066 eDPnSpIaGMPvLeVwKAkqViVlKRSMasGYAGVdNPLFfkeNTqMLFG eDPnS+IaGMPvLeVwK+kqViV+KRS+++GYA+VdNP+F+k+NT+ML+G hk05555 1067 EDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLG 1116 DAKKtveeileel<-* DAKKt++++++++ hk05555 1117 DAKKTCDALQAKV 1129 //